Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq18 233 3e-56 seq19 188 1e-42 >seq18 Length=564976 Score = 233 bits (258), Expect = 3e-56 Identities = 569/852 (67%), Gaps = 39/852 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||||| ||| ||| | |||||| Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG---TTTATA 125135 |||||||| || |||| ||| | | || ||| | | || | || || || Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGA---ACAAGGACGAAAAGTACTTCATC 229924 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 |||||| | |||||||||| || | || || || || |||||||| || || | Sbjct 229925 TCGCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAG 229984 Query 125196 CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 || ||||| ||| | || || |||| ||||| ||||| ||||| |||||| Sbjct 229985 CGTTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 230044 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---T 125312 || |||||| | |||||||| | |||||| || || |||| ||||| || | Sbjct 230045 ATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCCT 230104 Query 125313 CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 | || || | || || || ||||| |||||||| | || | || || ||| Sbjct 230105 GCCCAGCGCAGCTAC---CTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAG 230161 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 || | |||| | |||||| ||| | |||| | | ||| | | |||||| Sbjct 230162 GCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGTCGACCTTTGCCCAGCGTCTGGTG 230221 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || |||||||| ||||| |||||||| ||||| ||| || |||| || ||||| Sbjct 230222 GCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCTG 230281 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || |||||||| ||||| |||||| | || || || |||||| Sbjct 230282 CGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACGAG 230341 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCA 125610 || || ||| ||||||||| || || || ||||| || | | | ||| || | Sbjct 230342 GGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCCCTAG-CAA 230400 Query 125611 GATCCAGC--GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 || ||| | ||| || ||||| ||||||||||| || || | || Sbjct 230401 GA---AGCTTGTTGAGGAGATCATC---------ACCGATGCCGTTGTCATTGAGAAGGA 230448 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| || ||||| | || || | | || ||||||||||| | | || ||| | Sbjct 230449 GTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCA 230508 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATT 125783 |||||| |||||||| || || ||||| ||| |||| ||||| || ||| | Sbjct 230509 GTACATTGAGTTTGTCGCCGACCGTCTGCTG-----GTTGCCCTTGGCAACGAGAAGGTC 230563 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||| | ||| ||| |||||||| |||||| | ||| || || | |||||||||||| Sbjct 230564 TACCGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAAC 230623 Query 125844 TTTTTCGAGAAG 125855 || ||||||||| Sbjct 230624 TTCTTCGAGAAG 230635 >seq19 Length=545716 Score = 188 bits (208), Expect = 1e-42 Identities = 352/509 (69%), Gaps = 6/509 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| | ||| |||| || ||||||||||| Sbjct 482499 CAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGAT 482440 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || ||||||| ||| ||| || |||| || ||| | || Sbjct 482439 GTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGAT 482380 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCT-A 97054 | || || || ||| | || ||| | ||||||||||| ||| | || | ||| | Sbjct 482379 CTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGA-GAAGAACGCTGA 482321 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||| ||| ||||||||| || || || || ||| | ||||||| ||||| ||||| Sbjct 482320 CTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGGAGTT 482261 Query 97115 TGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCAC 97173 ||||||| |||| ||||||||||||||||| || | | ||| || | || | Sbjct 482260 TGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGTCGA-TCAAGGC-C 482203 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| |||||| | ||||| || ||| ||| ||||| || | |||| ||| || Sbjct 482202 CAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCATGCTG 482143 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 |||||||| | || ||||| |||||||| || |||| |||||| ||||| Sbjct 482142 TACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGCTCC 482083 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || |||||||| || ||| | |||||| | || || ||| || || ||| ||| Sbjct 482082 AACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGAGGTTGCCGTGTGCAACCTG 482023 Query 97353 GCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 || ||| | |||||| |||||| || Sbjct 482022 GCTTCGCTGGCTCTGCCGTCGTTTGTCGA 481994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058922102800