Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 >seq6 Length=1902109 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| |||| ||| || ||||| || | ||| |||||| | || | | Sbjct 701184 CGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCA 701125 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | | ||||| || ||||||||||| || ||| Sbjct 701124 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 701065 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | |||||| | | | ||||| | ||||| || | ||||||| Sbjct 701064 TCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATG 701005 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||||||||||||||| Sbjct 701004 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| |||| |||||| ||||| || | ||| || ||| | |||| |||||| Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | || || | | ||||| || |||||||| || || ||||| | Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | |||||| | | | || || | || || |||| ||||| || ||| Sbjct 700830 ATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTT 700771 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| || |||||||||||||| Sbjct 700770 CCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 |||| || | ||| || ||| || |||| | |||||||||||| || || | |||| Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | | |||||||| || ||||| || || ||||| | ||||| | |||||| | Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 ||| |||||| | | || || || | || || || || || || || || || || | Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438 Query 94998 AGATCTGCAT 95007 | |||||||| Sbjct 107437 AAATCTGCAT 107428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291031890800