Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq26 185 1e-42 seq1 114 2e-21 >seq26 Length=133288 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | ||| |||||| || |||||||| || ||||||||||| || | Sbjct 26082 CGCCAAGCGTCACCGTAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 26024 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| |||||||||||||| ||||||||| | || | || |||| || |||| Sbjct 26023 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGA 25964 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| | ||| |||||| || || |||| ||| || || ||| || | Sbjct 25963 CTCGTGGTGTTCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACGCCGTCACCTACACTG 25904 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| ||||| | ||||| || |||| | |||| Sbjct 25903 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGATGTTGTCTACGCTCTGAAGAGACAAG 25844 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 25843 GCCGCACCCTGTACGGTTTCGGTGGTTAA 25815 >seq1 Length=4116995 Score = 114 bits (126), Expect = 2e-21 Identities = 87/100 (87%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 2473590 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 2473648 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||| |||||||||||||||||||| ||||||||| |||| Sbjct 2473649 TCCGCCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTC 2473688 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| ||||| ||| ||||| |||||| || ||| |||| |||| Sbjct 2473756 TGATCTACGAGGAGACTCGTGGTGTGCTGAAGTCCTTCCTGGAGGGCGTCATCCGCGATG 2473815 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| |||||||| | || | ||||| | Sbjct 2473816 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 2473875 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || || ||||| | | || ||||| || ||||| Sbjct 2473876 CCCTGAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 2473919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075172570790