Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq26 185 1e-42
seq1 114 2e-21
>seq26
Length=133288
Score = 185 bits (204), Expect = 1e-42
Identities = 204/269 (76%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | ||| |||||| || |||||||| || ||||||||||| || |
Sbjct 26082 CGCCAAGCGTCACCGTAAGAT-TCTTCGCGACAACATCCAGGGTATCACCAAGCCCGCCA 26024
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| |||||||||||||| ||||||||| | || | || |||| || ||||
Sbjct 26023 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGA 25964
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||||| |||| | ||| |||||| || || |||| ||| || || ||| || |
Sbjct 25963 CTCGTGGTGTTCTCAAGTCCTTCCTTGAGGGTGTCATCCGTGACGCCGTCACCTACACTG 25904
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||||| ||||| | ||||| || |||| | ||||
Sbjct 25903 AGCACGCCAAGCGCAAGACCGTCACCTCGCTGGATGTTGTCTACGCTCTGAAGAGACAAG 25844
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | | || ||||| || |||||
Sbjct 25843 GCCGCACCCTGTACGGTTTCGGTGGTTAA 25815
>seq1
Length=4116995
Score = 114 bits (126), Expect = 2e-21
Identities = 87/100 (87%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 2473590 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 2473648
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
|||| |||||||||||||||||||| ||||||||| ||||
Sbjct 2473649 TCCGCCGTCTGGCTCGTCGTGGTGGTGTCAAGCGTATCTC 2473688
Score = 89.7 bits (98), Expect = 8e-14
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| ||||| ||| ||||| |||||| || ||| |||| ||||
Sbjct 2473756 TGATCTACGAGGAGACTCGTGGTGTGCTGAAGTCCTTCCTGGAGGGCGTCATCCGCGATG 2473815
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | || | ||||| |
Sbjct 2473816 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGACGTTGTCTACG 2473875
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| |||| || || ||||| | | || ||||| || |||||
Sbjct 2473876 CCCTGAAGCGCCAGGGCCGCACCCTGTACGGTTTCGGTGGTTAA 2473919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075172570790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |