Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq19 156 5e-33 seq18 154 2e-32 >seq19 Length=545716 Score = 156 bits (172), Expect = 5e-33 Identities = 458/699 (66%), Gaps = 14/699 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 ||||| || || | || ||||||| | ||| || ||| | || || || ||||| Sbjct 482288 CCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATG 482347 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| |||||||| || || | || ||||| | || | | ||||| || || Sbjct 482348 AAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCG 482407 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| || || |||||| | | | ||| | |||||||| |||| ||| ||| Sbjct 482408 TGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATG 482467 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || ||||| || ||||| || | ||| | || ||||| || | Sbjct 482468 GCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAAC 482527 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | || ||| ||||| |||||||| || |||| || || |||| || || ||| Sbjct 482528 ACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCA 482587 Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 |||||||||| | ||||| |||| || || || ||||| || ||||| | | Sbjct 482588 GTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGATCATAG 482645 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | || || | || || || || ||||| || || || |||||| || || | Sbjct 482646 CACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGA 482705 Query 63586 AACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAGAAGCG 63641 | || |||| | ||| | || | | ||||| || || | || || || ||| Sbjct 482706 AGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCG 482761 Query 63642 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA-TATCCCA 63700 || || || | || ||| | || ||||||||||||||| | ||| | | | || Sbjct 482762 TGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCA 482821 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 ||| || || || |||||||| | ||||||||| || | || || |||||| Sbjct 482822 -CCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCC 482880 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 || | |||| || ||| || |||| || || || ||||| || | ||| || Sbjct 482881 GTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAA 482940 Query 63821 GTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 ||| || || || | ||| |||||| || | ||||| Sbjct 482941 GTCACGGTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979 >seq18 Length=564976 Score = 154 bits (170), Expect = 2e-32 Identities = 371/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||||||||||||||| | ||| || ||||||||||| || || Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| ||||| || ||||| ||||| | || || |||||| Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 33480 || || || || || |||||||| | || | || || | || ||| ||| Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||||| ||||||| |||||||| | ||||| || || || ||||| || Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || ||| | | | || || | || || ||||| | || ||| | Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| || ||||| || || ||||| || |||||||| || | ||||||| ||| Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 || || || | || || || |||| || || || || || ||||| || || Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33777 || || |||| || || || || || ||||||| || || | | || ||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825 Query 33838 TTATACATGTTCCAGAT 33854 || ||||| | |||||| Sbjct 229824 TTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946966394800