Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq19 405 1e-107 >seq19 Length=545716 Score = 405 bits (448), Expect = 1e-107 Identities = 1147/1741 (66%), Gaps = 46/1741 (3%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||||| || || || ||||| ||| | |||||||||||| | || || ||| || Sbjct 482874 ATTGTCGAGCGTCCCCAGCACATGATTATGCGTGTTGCTGTCGGCAT---TTGGGGTGAC 482818 Query 363502 ---GTTGATGCCGCG--ATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACG 363552 ||||| ||| | ||||| || || || || |||| || || | ||||| Sbjct 482817 AGAGTTGA--CCGTGTTATTGAGACGTACAACCTCATGTCTA---GCAAGT-TCTTCACC 482764 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 |||||| |||| || | | ||| || || || | | | ||| |||| |||||||| Sbjct 482763 CACGCCTCGCCCACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTC 482704 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCT 363672 || | | |||||||| || || |||||||| || | || || || |||| ||||||| Sbjct 482703 CTGGTTGACATGAAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCT 482644 Query 363673 CTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA 363731 | || ||||||| || || || || ||| | ||||| ||||||| || | Sbjct 482643 ATGATCTCCAAGATGGCTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGGC 482584 Query 363732 CAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 || ||||| ||||||| || ||| || || | |||||||||| |||||||| Sbjct 482583 TCGT-ACATTGCCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTT 482525 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 |||| ||||| | ||||||||||||||||| |||||| || || ||||| || Sbjct 482524 CAACAACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCAT 482465 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 || || ||||| || || ||| | |||||||| ||||| || || || ||| || Sbjct 482464 TTACCTGGAGCCGTGGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGG 482405 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 || ||||| | || || || ||||| ||| || || ||| || | || | || || Sbjct 482404 CAAGGAGGAGGTTCGCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCAT 482345 Query 363972 GAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGTCCAGGT 364029 |||||| || ||| | | | | | ||| | || | ||||| |||| || || || Sbjct 482344 GAAGCGTGTCGAG--AAGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGC 482287 Query 364030 CTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 || | ||| | || || || | || || || ||||||||||| || ||||| Sbjct 482286 CTGGCTGATTGCTACGGCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGC 482227 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 | || | | || || |||||||| |||| ||||| |||| | |||| Sbjct 482226 CGTGGCCGCGCGTCGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACC 482167 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 |||||||| | || | ||| ||||||| || |||||||||||| ||||||| || Sbjct 482166 GAGACAGGCAACCCGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAG 482107 Query 364210 CACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCC 364268 |||| ||||| | || |||| |||||| || || ||||||||||| ||| || || Sbjct 482106 AACCTGGGTACCA-TCCGCAGCTCCAACCTGTGCACTGAGATTATTGAGTACTGTGCGCC 482048 Query 364269 CGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--------A 364320 || ||| |||||| || ||||| || ||| | || || ||| ||||||| | Sbjct 482047 TGATGAGGTTGCCGTGTGCAACCTGGCTTCGCTGGCTCTGCCGTCGTTTGTCGACTACAA 481988 Query 364321 AAAGA--TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA 364378 |||| |||| ||| |||| | || | || || ||| | || | ||| Sbjct 481987 CAAGAACGAGTAC----GACTTCCAGAAGCTGCACGAGGTCACCAAGGTTGTTGTGCGCA 481932 Query 364379 ATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATA 364438 | || || | || ||| || | || || | ||||| ||| | || | Sbjct 481931 ACCTGAACCGCATCATTGACGTCAACCACTACCCCGTGCCTGAGGCCCACAACAGCAACA 481872 Query 364439 TGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCA 364498 ||||||| || || |||||| ||||||| ||||| || ||||| | || || ||| Sbjct 481871 TGCGTCACCGTCCCATTGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTCCTGGCGCTGC 481812 Query 364499 AGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGT 364558 ||| | ||||| || | || ||||| || || | ||||||||||||| || | Sbjct 481811 GCATGCCTTTTGAGTCTGCCGAGGCTCGCAAGCTCAACACTCAGATCTTTGAAACCATCT 481752 Query 364559 ATTTTGCCGCAATGACTGCTTCG-TGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACT 364617 | || || |||| || ||| || | ||| ||| | |||| | |||||||| Sbjct 481751 ACCACGCTGCCCTGACGGCCTCGATGGAAATTGCCAAGGA-GGAGGGTACCTACTCTACG 481693 Query 364618 TATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCA 364677 |||||||| || || |||| ||||| | | ||||| || | |||||||||||||| Sbjct 481692 TATGAGGGTTCGCCCGTTTCTCAGGGCATCCTGCAGTTCGACATGTGGAATGTCACGCCC 481633 Query 364678 TCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAA 364736 | || ||| |||||| |||| | | | | | ||| || | ||| ||||| Sbjct 481632 AGCGACCTCTGGGACTGGGCGTCGCTCAAGGAGC-AGATCAAGCAGAACGGTGTGCGCAA 481574 Query 364737 CTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGA 364796 ||| || | ||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 481573 CTCGCTTCTGCTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGA 481514 Query 364797 GTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCC 364856 |||||| || |||| || ||| |||| || || || || | || || || | Sbjct 481513 GTGCTTTGAGCCGTACACTTCCAACATTTACCAGCGTCGTGTGCTGGCTGGCGAGTTCCA 481454 Query 364857 GGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCAT 364916 ||| || || | || | ||||| |||| || |||||| |||| ||| Sbjct 481453 GGTTGTCAACCCTTGGCTGCTGCGTGATCTGGTGGACCTGGGTCTGTGGTCGGACAACAT 481394 Query 364917 GAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGA 364976 ||||||| ||||| || | || || ||| | ||||||||||| | |||| || || Sbjct 481393 GAAGAACCGCATCATTGCGGAGAACGGATCTATCCAGAACATTCCCAGCATTCCCGACGA 481334 Query 364977 TCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGC 365036 | | ||| | | ||||| || || ||||| ||||| ||| || | | | ||||| Sbjct 481333 TATCAAGGCGCTGTACAAGACTGTGTGGGAGATTTCGCAGCGTACGGTTGTGCAGATGGC 481274 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCC 365096 || ||||| ||||| |||||| ||| ||||||| | ||| | ||||| | || Sbjct 481273 TGCTGATCGTGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACATTCACATGAAGGACCC 481214 Query 365097 AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTAAGACAG 365155 || | |||| |||| |||||| || | |||| ||||| ||||| ||||| | Sbjct 481213 TACGATGGGCAAGATTACCAGCATGCACTT-TGCGGGCTGGAAGCTGGGTCTCAAGACGG 481155 Query 365156 G 365156 | Sbjct 481154 G 481154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353099023460