Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq19 174 2e-38
seq18 122 1e-22
>seq19
Length=545716
Score = 174 bits (192), Expect = 2e-38
Identities = 465/704 (66%), Gaps = 14/704 (2%)
Strand=Plus/Plus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| ||||| || || | || ||||||| | ||| || ||| | || || || |
Sbjct 482283 CCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCT 482342
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| |||||||| |||||||| || || | || ||||| | || | | ||||| |
Sbjct 482343 TCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCT 482402
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || ||||| || || |||||| | | | ||| | |||||||| |||| ||
Sbjct 482403 TGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGT 482462
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| ||||| | | ||||| || ||||| || ||||| || | ||| | || ||||| |
Sbjct 482463 AAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGT 482522
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| | || | || ||| ||||| ||||| ||||| ||||| || || || | || ||
Sbjct 482523 TGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACG 482582
Query 63318 TTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
||| |||||||||| | ||||| |||| || || || ||||| || |||||
Sbjct 482583 AGCCAGTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGAT 482640
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| || || || | ||||| || |||||||| || || ||| |||||| ||
Sbjct 482641 CATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAAC 482700
Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAG 63491
|| || || |||| | ||| | || | | ||||| || || | || || |
Sbjct 482701 CAGGAAGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCG 482756
Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA-TA 63550
| ||||| || || | || ||| | || ||||||||||||||| | ||| | |
Sbjct 482757 AGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTC 482816
Query 63551 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610
| || ||| || || || |||||||| | ||||||||| || | || || |||
Sbjct 482817 TGTCA-CCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATC 482875
Query 63611 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63670
||| || | |||| || ||| || |||| || || || ||||| || | |||
Sbjct 482876 TTGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAG 482935
Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
||||| || || || | ||| |||||| || | |||||
Sbjct 482936 TTGAAGTCACGGTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979
>seq18
Length=564976
Score = 122 bits (134), Expect = 1e-22
Identities = 364/557 (65%), Gaps = 6/557 (1%)
Strand=Plus/Minus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || || ||| ||| ||||||||||| | ||| | ||||||||||| || ||
Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|||||||| || |||||||| ||||| || ||||| || || | || || |||||
Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 32837
|| || || || || |||||||| | || | || || | || ||| |||
Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897
|||||||| ||||||| |||||||| | ||||| || || || || || ||
Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125
Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957
|| || ||| | | | || || | || || || || | || ||| |
Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065
Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017
||||| || ||||| || || || || || ||||||||||| | ||||||| |||
Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005
Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077
|| || || | || || || | || || || || || || ||||| || ||
Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945
Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33134
|| || |||| || || || || || ||||||| || || | | || |||||
Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885
Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194
|| | | ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825
Query 33195 TTATACATATTCCAGAT 33211
|| ||||| | ||||||
Sbjct 229824 TTGTACATCTGCCAGAT 229808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631762388000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |