Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq19 174 2e-38 seq18 122 1e-22 >seq19 Length=545716 Score = 174 bits (192), Expect = 2e-38 Identities = 465/704 (66%), Gaps = 14/704 (2%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||||| | ||| || ||| | || || || | Sbjct 482283 CCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCT 482342 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| |||||||| |||||||| || || | || ||||| | || | | ||||| | Sbjct 482343 TCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCT 482402 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| || || |||||| | | | ||| | |||||||| |||| || Sbjct 482403 TGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGT 482462 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | ||||| || ||||| || ||||| || | ||| | || ||||| | Sbjct 482463 AAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGT 482522 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | || ||| ||||| ||||| ||||| ||||| || || || | || || Sbjct 482523 TGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACG 482582 Query 63318 TTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| |||||||||| | ||||| |||| || || || ||||| || ||||| Sbjct 482583 AGCCAGTGGCACGAATGCGGTGGACATTGA--GACCGATACCACCAGCCATCTTGGAGAT 482640 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | ||||| || |||||||| || || ||| |||||| || Sbjct 482641 CATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAAC 482700 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACTAG----TTCCCGCATTAAATAAGGTAGGAG 63491 || || || |||| | ||| | || | | ||||| || || | || || | Sbjct 482701 CAGGAAGCAAGAGGACA---GCTGA-GCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCG 482756 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA-TA 63550 | ||||| || || | || ||| | || ||||||||||||||| | ||| | | Sbjct 482757 AGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTC 482816 Query 63551 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610 | || ||| || || || |||||||| | ||||||||| || | || || ||| Sbjct 482817 TGTCA-CCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATC 482875 Query 63611 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63670 ||| || | |||| || ||| || |||| || || || ||||| || | ||| Sbjct 482876 TTGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAG 482935 Query 63671 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 ||||| || || || | ||| |||||| || | ||||| Sbjct 482936 TTGAAGTCACGGTCATACACAATGGCCGAGTCCAGCTCTTCCTT 482979 >seq18 Length=564976 Score = 122 bits (134), Expect = 1e-22 Identities = 364/557 (65%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | ||| | ||||||||||| || || Sbjct 230364 CAGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGA 230305 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| ||||| || ||||| || || | || || ||||| Sbjct 230304 CCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAG 230245 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCG--GCGCTGTCATGT 32837 || || || || || |||||||| | || | || || | || ||| ||| Sbjct 230244 ATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAA 230185 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| ||||||| |||||||| | ||||| || || || || || || Sbjct 230184 ATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTG 230125 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || || ||| | | | || || | || || || || | || ||| | Sbjct 230124 AACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTC 230065 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 ||||| || ||||| || || || || || ||||||||||| | ||||||| ||| Sbjct 230064 TCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | || || || | || || || || || || ||||| || || Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33134 || || |||| || || || || || ||||||| || || | | || ||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 || | | ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTC 229825 Query 33195 TTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 229824 TTGTACATCTGCCAGAT 229808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631762388000