Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq16 93.3 4e-14 >seq6 Length=1902109 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| ||||| ||||| | | Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | |||||| ||||| | ||||| |||||| Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| | || | || || ||| Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTCCGCCTCCGTGGTGGT 700969 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || ||| | | Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||||||||| || || || Sbjct 701030 GACACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 701089 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | |||||| ||| || | |||||||||||| Sbjct 701090 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAAC 701149 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | ||| |||| |||| || || Sbjct 701150 ATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGG 701196 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| || || || | || ||||| ||| | || || || || || Sbjct 107422 GTCAAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAG 107481 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| || |||| ||||| || ||||||||||| ||||| || Sbjct 107482 TCCTCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCG 107541 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || || || || || || ||||| ||| | |||||| |||||| | ||||| Sbjct 107542 GATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGAC 107601 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 107602 TACAACATCCAGAA 107615 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || ||| | |||| ||| | ||| | |||| Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACGTCAAGTCC 700312 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| || || || |||||||| || || || || || Sbjct 700313 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAAG 700372 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || || | ||||| |||||||| || || || |||||| | || Sbjct 700373 CAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 700432 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTTTTC-CATTTTAAAATTATA 22465 |||| |||| |||| || ||| | | |||| || ||||| Sbjct 700433 CTAGTCCTGCGTCTGCGTGGTGGTATGCAGATTTGTAAGTTATA 700476 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || | ||||| ||||| || | | |||||| | ||| | |||| Sbjct 700538 ACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACCATCGACAACGTCAAGTCC 700597 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || || || ||||| || || |||||||| Sbjct 700598 AAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAG 700657 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||||| | || || |||||||| || || || || ||| Sbjct 700658 CAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCAGAAGGAGTCTACC 700711 >seq16 Length=638914 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| | ||| || || || | || ||||| || | || || || || || || | || Sbjct 520745 GCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGA 520804 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| | |||| || || || ||||||||||| ||||| || || || || Sbjct 520805 CACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCA 520864 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 ||||| || || || ||||| ||| | |||||| ||||||| | ||||| |||||||| Sbjct 520865 GCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACAT 520924 Query 22401 TCAAAA 22406 ||| || Sbjct 520925 TCAGAA 520930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727846536950