Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq19 149 1e-30
seq26 123 5e-23
seq23 98.7 2e-15
seq18 96.9 7e-15
>seq19
Length=545716
Score = 149 bits (164), Expect = 1e-30
Identities = 462/707 (65%), Gaps = 31/707 (4%)
Strand=Plus/Plus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||| | ||| |||| ||||||||||||||||||||| | | | || || | ||
Sbjct 481240 CTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGTACGCTGCGA 481299
Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234
||||||||| |||||||||| ||||||| ||| |||||| || |||||
Sbjct 481300 AATCTCCCACACAGTCTTGTACAGCGCCTTGATATCGTCGGGAATGCTGGGAATGTTCTG 481359
Query 293235 GATAGACCCTCCGTT---GGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCAC 293290
|||||| |||||| ||||| || |||||||||| | || ||||| || ||||
Sbjct 481360 GATAGA---TCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCA- 481415
Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGC 293350
| | | || || || | || ||| ||||||||| ||||||| ||||| || |
Sbjct 481416 GGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCAGCCAGCACAC 481475
Query 293351 GACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG--------CA 293402
|||| ||||||||| ||||| || ||| ||||| || || ||
Sbjct 481476 GACGCTGGTAAATGTTGGAAGT-----GTACGG----CTCAAAGCACTCGTTGTTGCCCA 481526
Query 293403 -AATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC-- 293459
|||||| | || || || ||||| | ||| | || ||||| | ||||||
Sbjct 481527 GAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGT 481586
Query 293460 -CTTCTTGACACGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCC 293517
|| ||||| || | ||| |||||||| |||||| ||| || || ||| |
Sbjct 481587 TCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCTG-GGCGTGACATTC 481645
Query 293518 CAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGG 293577
|| | | |||||| ||| |||| | || || |||||| | || | | ||
Sbjct 481646 CACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTAGGTA 481705
Query 293578 CCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAG 293637
|| | ||| | | | || || ||| | ||||| ||| ||| || |||
Sbjct 481706 CCCTCCTCCTTGGCAATTTCCATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAG 481765
Query 293638 ATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAAC 293697
|||| | ||||||||||||||||| |||| ||||| ||||| |||| | |||
Sbjct 481766 ATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAAAAGGCATGCGCAGCGCCAGGAAG 481825
Query 293698 ACATCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCT 293757
|||| ||||||||| ||||| ||||||| ||| || ||||| ||||||| | |
Sbjct 481826 GCATCAGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTGTGG 481885
Query 293758 GCCTCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804
||||| || || | || | || |||||| | | || ||||||
Sbjct 481886 GCCTCAGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTT 481932
>seq26
Length=133288
Score = 123 bits (136), Expect = 5e-23
Identities = 162/222 (73%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||||||||| |||| |||||| || || || |||| ||||||||||| |||
Sbjct 88074 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTTAAC 88015
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| | | ||||||||| | || || ||||| ||||||||| || ||
Sbjct 88014 CAGACCCACCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 87955
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|||||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 87954 GGTAAGTCGACTCTGATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 87896
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 87895 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 87854
Score = 95.1 bits (104), Expect = 2e-14
Identities = 165/236 (70%), Gaps = 12/236 (5%)
Strand=Plus/Minus
Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220
|| || |||| |||||||| ||||| ||||| || ||||| ||||| ||||| || |||
Sbjct 87258 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACCCTGATCAACGTTCTG 87199
Query 280221 ACTGGCGAGA-----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275
||||| ||| |||| |||||| | | ||| |||| ||||| || |
Sbjct 87198 ACTGGTGAGCTGATTCCCA--CCACTGGTGAGA---TTTACCAGCACGAGAACATCCGTA 87144
Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335
| || || | |||||||||||| |||||| || |||||||||||| ||||||
Sbjct 87143 TTGCCTATATTAAGCAGCACGCTTTCGCCCACATTGATAACCACCTGGACTCGACTCCCT 87084
Query 280336 ACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390
| ||||| |||||||| | | || | ||| |||||| ||| | |||| ||
Sbjct 87083 CGGAGTACATCCAGTGGCG-TTTCCAGACTGGCGAGGATCGTGAGACCATGGACCG 87029
>seq23
Length=241759
Score = 98.7 bits (108), Expect = 2e-15
Identities = 133/183 (73%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235
|| |||||||| |||||||||||||| || || ||||| | ||||| |||||| |
Sbjct 15946 ATCGGACCCAACGGTGCGGGTAAGTCGACGCTCATCAAGATGCTGACGGGCGAG-GTTAT 16004
Query 280236 GCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294
|| || |||| | | | |||||| |||||| |||| || | |||| || |||||
Sbjct 16005 TCCGTCGACGGGTAAGGTGGAGAAGCACCCCAACCTGCGTATTGGTTACATCAAGCAGCA 16064
Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354
||| | | ||| | |||| |||||||| | ||| || ||||| ||| | ||||||||
Sbjct 16065 CGCGCTGGAGCACGTGGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAGTGGCG 16124
Query 280355 CTA 280357
||
Sbjct 16125 TTA 16127
>seq18
Length=564976
Score = 96.9 bits (106), Expect = 7e-15
Identities = 375/588 (64%), Gaps = 21/588 (4%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||| || |||| ||||| |||||||||||| |||||||| |||
Sbjct 230631 TCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTCGTG 230572
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||| ||| | |||||| || || | | ||||| || |||||||| |
Sbjct 230571 GAGCGGTAGACCTTCTCGTTGCCAAGGGCAACCAGCAGACGGTCGGCGACAAACTCAATG 230512
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||| || || | ||||||||||| || ||||| | ||||| | |
Sbjct 230511 TACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCGCAAGGCAGAGCCTCGGTCAGG 230452
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTC---------CTCCACAATTGCCTTCACCTGTGCC 251793
|| ||||| || || |||| || || |||| ||| |||| |||
Sbjct 230451 AACTCCTTCTCAATGACAACGGCATCGGTGATGATCTCCTCAACAAGCTTC----TTGCT 230396
Query 251794 AGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCC 251853
|| | | |||| ||| | ||| | || || | |||| | ||||||||||
Sbjct 230395 AGGG--CGGGTGTT---CAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGACCC 230341
Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913
||||| || || | ||||||||| | ||| || ||||||| ||||| || |
Sbjct 230340 TCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTGCGC 230281
Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973
|||||||| || | | || | || ||||| | | ||||||||| | | ||
Sbjct 230280 AGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCC 230221
Query 251974 ACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCC 252030
|| || |||| ||||| ||||| | | || | |||| | ||||| | |||
Sbjct 230220 ACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCCACTTGAGAGCCCAGTCGGCC 230161
Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG 252090
|| | || || || || ||||| || | || || || | |||| ||||
Sbjct 230160 TTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTGGGCAGGC 230101
Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138
|||| |||| | || | || || |||||| ||||||| ||||||
Sbjct 230100 TCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATG 230053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836404925230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |