Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 149 1e-30 seq26 123 5e-23 seq23 98.7 2e-15 seq18 96.9 7e-15 >seq19 Length=545716 Score = 149 bits (164), Expect = 1e-30 Identities = 462/707 (65%), Gaps = 31/707 (4%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | ||| |||| ||||||||||||||||||||| | | | || || | || Sbjct 481240 CTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGTACGCTGCGA 481299 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| |||||||||| ||||||| ||| |||||| || ||||| Sbjct 481300 AATCTCCCACACAGTCTTGTACAGCGCCTTGATATCGTCGGGAATGCTGGGAATGTTCTG 481359 Query 293235 GATAGACCCTCCGTT---GGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCAC 293290 |||||| |||||| ||||| || |||||||||| | || ||||| || |||| Sbjct 481360 GATAGA---TCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCA- 481415 Query 293291 GAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGC 293350 | | | || || || | || ||| ||||||||| ||||||| ||||| || | Sbjct 481416 GGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCAGCCAGCACAC 481475 Query 293351 GACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCG--------CA 293402 |||| ||||||||| ||||| || ||| ||||| || || || Sbjct 481476 GACGCTGGTAAATGTTGGAAGT-----GTACGG----CTCAAAGCACTCGTTGTTGCCCA 481526 Query 293403 -AATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC-- 293459 |||||| | || || || ||||| | ||| | || ||||| | |||||| Sbjct 481527 GAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGT 481586 Query 293460 -CTTCTTGACACGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGAGGTGTAACACCC 293517 || ||||| || | ||| |||||||| |||||| ||| || || ||| | Sbjct 481587 TCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCTG-GGCGTGACATTC 481645 Query 293518 CAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGG 293577 || | | |||||| ||| |||| | || || |||||| | || | | || Sbjct 481646 CACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTAGGTA 481705 Query 293578 CCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAG 293637 || | ||| | | | || || ||| | ||||| ||| ||| || ||| Sbjct 481706 CCCTCCTCCTTGGCAATTTCCATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAG 481765 Query 293638 ATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAAC 293697 |||| | ||||||||||||||||| |||| ||||| ||||| |||| | ||| Sbjct 481766 ATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAAAAGGCATGCGCAGCGCCAGGAAG 481825 Query 293698 ACATCCTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCT 293757 |||| ||||||||| ||||| ||||||| ||| || ||||| ||||||| | | Sbjct 481826 GCATCAGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTGTGG 481885 Query 293758 GCCTCGGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 ||||| || || | || | || |||||| | | || |||||| Sbjct 481886 GCCTCAGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTT 481932 >seq26 Length=133288 Score = 123 bits (136), Expect = 5e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| |||||| || || || |||| ||||||||||| ||| Sbjct 88074 GGTGAGGATCTGTGCAACTGCACTTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTTAAC 88015 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | | ||||||||| | || || ||||| ||||||||| || || Sbjct 88014 CAGACCCACCTGCGCCTGAAGCGTGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 87955 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 |||||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 87954 GGTAAGTCGACTCTGATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 87896 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 87895 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 87854 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/236 (70%), Gaps = 12/236 (5%) Strand=Plus/Minus Query 280161 TCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTG 280220 || || |||| |||||||| ||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 87258 TCGCGTATTGCCGTCATTGGTCCCAACGGTGCTGGCAAGTCGACCCTGATCAACGTTCTG 87199 Query 280221 ACTGGCGAGA-----CCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGA 280275 ||||| ||| |||| |||||| | | ||| |||| ||||| || | Sbjct 87198 ACTGGTGAGCTGATTCCCA--CCACTGGTGAGA---TTTACCAGCACGAGAACATCCGTA 87144 Query 280276 TGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTA 280335 | || || | |||||||||||| |||||| || |||||||||||| |||||| Sbjct 87143 TTGCCTATATTAAGCAGCACGCTTTCGCCCACATTGATAACCACCTGGACTCGACTCCCT 87084 Query 280336 ACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 87083 CGGAGTACATCCAGTGGCG-TTTCCAGACTGGCGAGGATCGTGAGACCATGGACCG 87029 >seq23 Length=241759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAG 280235 || |||||||| |||||||||||||| || || ||||| | ||||| |||||| | Sbjct 15946 ATCGGACCCAACGGTGCGGGTAAGTCGACGCTCATCAAGATGCTGACGGGCGAG-GTTAT 16004 Query 280236 GCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCA 280294 || || |||| | | | |||||| |||||| |||| || | |||| || ||||| Sbjct 16005 TCCGTCGACGGGTAAGGTGGAGAAGCACCCCAACCTGCGTATTGGTTACATCAAGCAGCA 16064 Query 280295 CGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||| | | ||| | |||| |||||||| | ||| || ||||| ||| | |||||||| Sbjct 16065 CGCGCTGGAGCACGTGGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAGTGGCG 16124 Query 280355 CTA 280357 || Sbjct 16125 TTA 16127 >seq18 Length=564976 Score = 96.9 bits (106), Expect = 7e-15 Identities = 375/588 (64%), Gaps = 21/588 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || |||| ||||| |||||||||||| |||||||| ||| Sbjct 230631 TCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTCGTG 230572 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||| ||| | |||||| || || | | ||||| || |||||||| | Sbjct 230571 GAGCGGTAGACCTTCTCGTTGCCAAGGGCAACCAGCAGACGGTCGGCGACAAACTCAATG 230512 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || || | ||||||||||| || ||||| | ||||| | | Sbjct 230511 TACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCGCAAGGCAGAGCCTCGGTCAGG 230452 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTC---------CTCCACAATTGCCTTCACCTGTGCC 251793 || ||||| || || |||| || || |||| ||| |||| ||| Sbjct 230451 AACTCCTTCTCAATGACAACGGCATCGGTGATGATCTCCTCAACAAGCTTC----TTGCT 230396 Query 251794 AGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCC 251853 || | | |||| ||| | ||| | || || | |||| | |||||||||| Sbjct 230395 AGGG--CGGGTGTT---CAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGACCC 230341 Query 251854 TCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTG 251913 ||||| || || | ||||||||| | ||| || ||||||| ||||| || | Sbjct 230340 TCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTGCGC 230281 Query 251914 AGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCA 251973 |||||||| || | | || | || ||||| | | ||||||||| | | || Sbjct 230280 AGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCC 230221 Query 251974 ACAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCC 252030 || || |||| ||||| ||||| | | || | |||| | ||||| | ||| Sbjct 230220 ACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCCACTTGAGAGCCCAGTCGGCC 230161 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG 252090 || | || || || || ||||| || | || || || | |||| |||| Sbjct 230160 TTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTGGGCAGGC 230101 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| |||| | || | || || |||||| ||||||| |||||| Sbjct 230100 TCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATG 230053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836404925230