Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18 434 2e-116 seq19 358 1e-93 >seq18 Length=564976 Score = 434 bits (480), Expect = 2e-116 Identities = 622/862 (72%), Gaps = 32/862 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| ||| Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAGTTTTTCCTCAA 42415 ||||||| || |||| | || | ||| | ||||||||| ||| || Sbjct 229868 TCCAAGGATCTTCACGACTGGAACA-ACCGCATGAACAAGGACGAAAAGTACTTCATCTC 229926 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | |||||||||||||| || || |||||||| ||||| |||||| ||| | | Sbjct 229927 GCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGCG 229986 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| | ||||| ||| | ||||| ||||||||||||||||||||||| || Sbjct 229987 TTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGAT 230046 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| | ||||||| |||| |||||| ||| || Sbjct 230047 GGAGAACATCCACTCGGAGACGTACTC---GCTGCTCATCGACACCTACATCAAGGAGCC 230103 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | |||||||| ||||| || || || || ||||| ||||| Sbjct 230104 TGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAGGC 230163 Query 42653 GGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGT 42709 |||||||| ||||| ||||| ||| | ||| | || || | | || | ||||| Sbjct 230164 CGACTGGGCTCTCAAGTGGATTTCCGA---CCGCGAGTCGACCTTTGCCCAGCGTCTGGT 230220 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 |||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 230221 GGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCT 230280 Query 42770 ---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||||| ||| | ||||||||| || ||||| || ||||| || || | || Sbjct 230281 GCGCAAGC--GTGGTCT-GATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGA 230337 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||| ||||| | |||||||||||||| || |||||| ||||| | ||| ||| Sbjct 230338 CGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCG---CACCTGA-ACACCCGCC 230393 Query 42887 CTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 || | ||| ||| || || |||||||| || ||||| | || ||||||||||||| Sbjct 230394 CTAGCAAGAAGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCC 230453 Query 42946 TCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACA 43005 | || || | ||||| ||||| | ||||||||| |||||||||| |||||| Sbjct 230454 TGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACA 230513 Query 43006 TCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACAACAC 43063 | ||| |||||||||| ||| ||| |||| ||| || | ||||| | | Sbjct 230514 TTGAGTTTGTCGCCGACCGTCTGCTGGTTGCC-CTTGGCAACGAGAAG-GTCTACCGCTC 230571 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 || |||||| ||||| ||||||||||||||| ||| || ||||||||||| ||||| Sbjct 230572 CACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGA 230631 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||||| || | ||||||||| Sbjct 230632 GAAGCGTGTTGGTGACTACCAG 230653 >seq19 Length=545716 Score = 358 bits (396), Expect = 1e-93 Identities = 1224/1887 (65%), Gaps = 67/1887 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | ||| || | || |||| || | ||||||||||||||| |||||||| | Sbjct 481107 TGAACTGAATGGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGAC 481166 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| | | ||||||| || | ||| |||| | ||||| | Sbjct 481167 CCAGCTTCCAGCCCGCAAAGTGCATGCTGGTAATCTTGCCCATCGTA------GGGTCCT 481220 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 | | ||| | ||||| |||||| |||||||| |||| | || || || | Sbjct 481221 TCATGT---GAATG---TTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAG 481274 Query 243921 CCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGG 243979 |||| | | || | ||| || ||||| || | |||||||| | | ||||| Sbjct 481275 CCATCTGCACAACCGTACG-CTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGATA 481333 Query 243980 TGCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 | ||||| || || || ||||||| | || || || | | |||| || | Sbjct 481334 TCGTCGGG-AATGCTGGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTT 481392 Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCAC 244095 |||||| || |||||| |||| | | |||| | || ||| ||| ||| || Sbjct 481393 CATGTTGTCCGACCACAGACCCAGGTCCACCAGATCA-CG--CAGCAGCCAAGGGTTGAC 481449 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||| ||||| || | |||||| || |||||||| | |||| || |||||| | Sbjct 481450 AACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAA 481509 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || ||| |||||||||| ||||||| |||||| || |||||||| |||| | ||| || Sbjct 481510 GCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAG 481569 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCC 244275 ||| | ||| |||| | || ||| | ||||| ||||||||| Sbjct 481570 CGAGTTGCGCACACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCA------ 481623 Query 244276 CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGG 244335 |||||| | | ||| ||||||||| |||||||| | |||| ||||| Sbjct 481624 ---GAGGTCGCTGGGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGG 481680 Query 244336 GCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT--CGTCG 244393 ||||| || || | ||||| ||| || || ||| | || || | |||| Sbjct 481681 CGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCAAT-TTCCATCGAGGCCGTC- 481738 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 ||||| |||| ||||||||| || |||||| |||| | | ||| |||| | | | Sbjct 481739 AGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGAC 481798 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 || || |||| || | || |||| | || ||||| ||||| || || | || ||| Sbjct 481799 TCAAAAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATG 481858 Query 244514 GGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATC 244573 || | ||| ||| ||||| | ||| || ||||||||||| |||| |||| || Sbjct 481859 GGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGCACGGGGTAGTGGTTGACGTCAATG 481918 Query 244574 ACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 | ||| |||||||| | | | ||| ||| |||| ||| ||||||||| Sbjct 481919 ATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTAC 481978 Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGG 244693 |||| || | | || || |||||| || || | |||||| Sbjct 481979 TCGTT------CTTG----TTGTAGTCG--ACAAACGACGGCAGAGCCAGCGAAGCCAGG 482026 Query 244694 TTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTG 244753 ||||| ||||| ||||| || | ||||| | |||||| ||||| ||||| | Sbjct 482027 TTGCACACGGCAACCTCATCAGGCGCACAGTACTCAATAATCTCAGTGCACAGGTTGGAG 482086 Query 244754 CACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGC 244813 | |||||| ||||||| || || ||| |||| ||||||| ||||||||| ||| Sbjct 482087 CTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGC 482146 Query 244814 ATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCC 244873 ||||| || || |||||| |||||| | || | | || ||| || | | ||| Sbjct 482147 ATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCC 482206 Query 244874 TTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCG 244933 |||| || | ||| | ||||||| |||||| |||||||||||| ||||| Sbjct 482207 TTGATCGACGCGCGGCCACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCC 482266 Query 244934 GGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCG 244993 ||| || || | ||||| |||||| |||||||| || |||| || || Sbjct 482267 TCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCG 482326 Query 244994 CCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTG 245053 | || ||| | || ||||||||| ||||| ||||| || ||| |||| || || | | Sbjct 482327 TTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGG 482386 Query 245054 GTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACG 245113 | | ||| ||| ||| |||||| | ||| || | || ||||| || || || Sbjct 482387 GCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCG 482446 Query 245114 TGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACC 245173 ||||| ||||||| ||| | || | ||| || || ||||||||||| |||||||| || Sbjct 482447 TGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACG 482506 Query 245174 ATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTT 245232 | | || | |||||| | ||||| | || | || ||||| ||| ||||| Sbjct 482507 TAGCGGGC-AGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTT 482565 Query 245233 GGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTC 245288 ||||| ||||| | ||| || | | | ||| | ||||||| || | | Sbjct 482566 TGTGCCGGCAATGTACGAGCCAGTGGCAC---GAATGC-GGTGGACATTGAGACCGATAC 482621 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 | || || ||||||||| | || || |||||| || || |||||||| || Sbjct 482622 CACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCG 482681 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 ||| |||||||| | ||| ||||| ||||||||||| | || ||| | | || || Sbjct 482682 AGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGT 482741 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA 245468 |||| |||||||| ||||||||| ||| | ||| || | || |||||||| | Sbjct 482742 TGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAA 482801 Query 245469 GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTCATGAGGGTGTGCTG 245526 | | ||| | |||| || | ||| | ||| | ||| | ||||||| Sbjct 482802 TAACACGGTCAACTCTGTCACC--CCAAATGCCGACAGCAACACGCATAATCATGTGCTG 482859 Query 245527 GGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 ||| |||| || || ||| | ||| |||| ||| || ||||| || ||||| Sbjct 482860 GGGACGCTCGACAATCTTGCCGTCGAG---CTTCAGCAGGTACGAACGCTCCAGGGTCTT 482916 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTC 245610 ||| ||||||||| |||| ||||| Sbjct 482917 GAAGCCAAAGTACTGGTAGTTGAAGTC 482943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338845872800