Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq18 132 1e-25 seq26 98.7 2e-15 >seq18 Length=564976 Score = 132 bits (146), Expect = 1e-25 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || |||| | || ||||| ||| | ||| ||| | || ||| Sbjct 230417 ATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCC 230476 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | || |||||| |||||||| || || || |||||||| | Sbjct 230477 CTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTG 230536 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || ||||| | ||||| || ||| ||||| ||||||||||| ||| |||||| Sbjct 230537 CTGGTTGCCCTTGGCAACGAGAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAG 230596 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| ||||| || || || ||||||||||| |||||||| |||| || || Sbjct 230597 AACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 230652 >seq26 Length=133288 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || |||| ||| |||| || || ||||||||||| || ||||||| || Sbjct 87901 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATCAGAGTCGACTTACCCGAACC 87960 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || |||||||||||||| | ||||||||||| | | || | ||| || Sbjct 87961 GTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGTGGGTCTGGTTAAG 88020 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || || || || || || | |||||||||||||| Sbjct 88021 CAGAATCTTGGCACCGTAGGCAAGGGAGAAAGTGCAGTTGCACAGATCCTCACC 88074 Score = 93.3 bits (102), Expect = 9e-14 Identities = 206/300 (69%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 333637 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 333696 ||| |||||| ||||| || ||||||||||| | || | ||| || | || Sbjct 87363 TGACACCCTCAAGGAAACCAGGCTCGGGGAAGGTGAACTCGATCTCCGAGGCACCCAGCT 87422 Query 333697 CGTAGTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 333753 ||||||| ||| | | || ||| | |||||| |||||||| | ||| || || || Sbjct 87423 CGTAGTACGACTTGGCCGA---GGGGCACTTCTTGACGAACTCAGCCAGGTTACCACGGT 87479 Query 333754 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 333812 | ||| ||||| | | | ||||| |||||||| | | || || || ||||||| Sbjct 87480 AGCGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACGTTGTCGAGG 87535 Query 333813 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 333868 || || |||||||| || ||||| | |||| || | |||| ||| |||||| Sbjct 87536 AAACCAGAGTCGTGAGAGACAATGAT---CGAA--GTGC--AAGGAGAGTTGCACAGGTA 87588 Query 333869 TTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAG 333928 || ||||||| | ||||| |||| ||||||||||| |||||||| ||||| || Sbjct 87589 GTCCTCCAGCCACTTAACGTTCTTCACATCCAGATGGTTGGTGGGCTCGTCCAGAAGCAG 87648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879576080500