Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq19 298 5e-76 >seq19 Length=545716 Score = 298 bits (330), Expect = 5e-76 Identities = 1083/1670 (65%), Gaps = 36/1670 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| |||||||| || ||| | || ||| Sbjct 482937 AACTACCAGTACTTTGGCTTCAAGACCCTGGAGCGTTCGTACCTGCTGAAGCTCGACGGC 482878 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || |||| ||| || || Sbjct 482877 AAGATTGTCGAGCGTCCCCAGCACATGATTATGCGTGTTGCTGTCGGCATTTGGGGTGAC 482818 Query 93835 -GACATG-CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 || || ||| |||| | | | | || |||| |||| | ||| | Sbjct 482817 AGAGTTGACCG--TGTTATTGAGACGTACAACCTCATGTCTAGCAAGTTCTTCACCCACG 482760 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGA 93952 || | || || || ||||||||||| || || | | ||| |||| || || |||||| Sbjct 482759 CCTCGCCCACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGG 482700 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| ||||| ||| || |||| ||| | |||||| ||||| | Sbjct 482699 TTGAC-ATGAAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATG 482641 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| ||| ||||||| | | ||||||| || || Sbjct 482640 ATCTCCAAGATGGCTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGGCTCG 482581 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| || || || ||||||||||| || | || ||||| || || |||||| Sbjct 482580 TACATTGCCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAAC 482521 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||| ||||||||||| | | | ||| | || || | || Sbjct 482520 AACACTGCCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTAC 482461 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||||||||| ||| | ||| | |||||||| |||||||||||||| Sbjct 482460 CTGGAGCCGTGGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAG 482401 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | ||| | || || ||| || || ||| | || || || || ||||| Sbjct 482400 GAGGAGGTTCGCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAG 482341 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || |||||||| ||| | | ||||| || | || ||||| || || || || ||| | Sbjct 482340 CGTGTCGAGAAGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCT 482281 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | || | ||||| | | |||| | ||||| ||||| | | Sbjct 482280 GATTGCTACGGCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGC 482221 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | | || | || |||||||||| | || |||| | ||| ||||| Sbjct 482220 CGCGCGTCGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACA 482161 Query 94492 GGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 || | || | ||| ||| |||||| | ||| |||| |||| ||||||| || |||| Sbjct 482160 GGCAACCCGTTCATGCTGTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCT 482102 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || ||| ||||| || |||||||| |||||| | ||||| | | || || || Sbjct 482101 GGGTACCATCCGCAGCTCCAACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGA 482042 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | |||| ||||| ||||||| || | ||| | | || || ||| ||||| Sbjct 482041 GGTTGCCGTGTGCAACCTGGCTTCGCTGGCTCTGCCGTCGTTTGT-CGA-----CTACA- 481989 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATG--GTCTTG 94728 | | | || ||| | || |||| | || | |||| || || Sbjct 481988 -ACAAGAAC-GAGTACGACTTCCAGAAGCTGCACGAGGTCAC--CAAGGTTGTTGTGCGC 481933 Query 94729 AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAAC 94788 ||||||||| | | || ||| ||| ||||||||| || ||||| | ||| ||| Sbjct 481932 AACCTGAACCGCATCATTGACGTCAACCACTACCCCGTGCCTGAGGCCCACAACAGCAAC 481873 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || || || ||||| || | || || |||||| | || || || | || | || Sbjct 481872 ATGCGTCACCGTCCCATTGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTCCTGGCGCTG 481813 Query 94849 CGTCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 || |||| | || |||| ||| || || | | || | || || |||| ||| Sbjct 481812 CGCATGCCTTTTGAGTCTGCCGAGGCTCGCAAG-CTCAACACTCAGATCTTTGAAACCAT 481754 Query 94908 TTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGG---CCACA 94964 || ||| ||| ||| || | | | |||| ||| || ||| | || Sbjct 481753 CTACCACGCTGCCCTGACGGCCTCGATGGAAATTGCCA---AGGA-GGAGGGTACCTACT 481698 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 | | ||| || |||||| | |||||||| | ||||||||| | ||| ||| Sbjct 481697 CTA--CGTATGAGGGTTCGCCCGTTTCTCAGGGCATCCTGCAGTTCGACATGTGGAATGT 481640 Query 95025 GAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAACACGGT 95082 | |||| | || | |||||| | |||| | | || ||| | || | ||||| Sbjct 481639 CACGCCCAGCGACCTCTGGGACTGGGCGTCGCTCAAGGAGCAGAT-CAAGCAGA-ACGGT 481582 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 ||| ||| |||| || | || || ||||| |||||| |||| ||||||| || ||| Sbjct 481581 GTGCGCAACTCGCTTCTGCTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGC 481522 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||||| || || || | ||| |||||| | ||| | | || ||||| || || Sbjct 481521 AACAACGAGTGCTTTGAGCCGTACACTTCCAACATTTACCAGCGTCGTGTGCTGGCTGGC 481462 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGT 95262 || |||| || ||||| || || || || ||| | |||||| ||||| Sbjct 481461 GAGTTCCAGGTTGTCAACCCTTGGCTGCTGCGTGATCTGGTGGACCTGGGTCTGTGGTCG 481402 Query 95263 GACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATA 95322 ||||| | ||||||| | | | ||||| || |||||||||| || || Sbjct 481401 GACAACATGAAGAACCGCATCATTGCGGAGAACGGATCTATCCAGAACATTCCCAGCATT 481342 Query 95323 CCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || || || ||||||||||| |||||||| ||||||||||| ||||||| Sbjct 481341 CCCGACGATATCAAGGCGCTGTACAAGACTGTGTGGGAGATTTCGCAGCG 481292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723014478800