Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq19 172 5e-38
seq18 127 2e-24
seq6 116 4e-21
>seq19
Length=545716
Score = 172 bits (190), Expect = 5e-38
Identities = 726/1125 (65%), Gaps = 55/1125 (5%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || |||||||| |||| ||| || | | || | ||| |||| | |
Sbjct 481443 GGTTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACG 481502
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| |||||| | ||||| ||||| || || || | |||| | || |||||||| ||| |
Sbjct 481503 GCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAA 481562
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206
|| | || || |||| |||| | ||| || | | ||||| | || | ||| |||
Sbjct 481563 GCAGAAGCGAGTTGCGCACACCGTTCTGCTTGA-TCTGCTCCTTGAGCGACGCCCAGTCC 481621
Query 153207 CACAG--CGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGG 153264
|| || ||| | || || | |||||||||||| |||| | | || || |||
Sbjct 481622 CAGAGGTCGCTG--GGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGG 481679
Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCCTCG 153323
| || || ||||| |||| | || || | ||| | ||| || | | |||
Sbjct 481680 GCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTC-CATCGAGGCCGTC 481738
Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTC 153383
|| || | | ||| |||||||| ||| || | ||||| | || || | |
Sbjct 481739 AGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGAC 481798
Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443
|| | |||||||||||| || ||||| || ||||||||||| | ||| || || |||
Sbjct 481799 TCAAAAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATG 481858
Query 153444 GGTCGATGCTTCTCGTTGC-----TGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGAT 153498
|| || || | ||||| || ||||| || | ||| ||||| ||| |
Sbjct 481859 GGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGC-----ACGGGGTAGTGGTTGACGT 481913
Query 153499 CGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAAT 153558
| || || ||| ||||||||||| || || || || | | | | || |||| ||| |
Sbjct 481914 CAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGT 481973
Query 153559 CATA---GGTCATTTCGTCGACGCGTACGCATCGA-TTCACGGCAATAGACGCCAGATTA 153614
| || | || | | || | || || | ||| || || | || ||||| ||
Sbjct 481974 CGTACTCGTTCTTGTTGTAGTCG---AC-AAACGACGGCAGAGCCAGCGAAGCCAGGTTG 482029
Query 153615 CAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673
|| ||||| ||| || |||| | | ||||| | ||||| | ||| |||||| ||
Sbjct 482030 CACACGGCAACCTCATCAGGCG-CACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCT 482088
Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733
||| |||| || | ||| ||||| ||||| ||||| ||| ||| | |||||
Sbjct 482089 GCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCAT 482148
Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC-- 153790
| |||| ||| |||||| || | || | || | || ||| | ||| ||
Sbjct 482149 GAACGGGTTGCCTGTCTCGGTCTGGGCCTCCA-GAATGGCGTACCACAGCTTCTGGGCCT 482207
Query 153791 ---TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847
||| || ||| ||| |||||||| |||||| |||||||| ||||||
Sbjct 482208 TGATCG-ACGCGCGGCC----ACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAA 482262
Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 153907
||| ||||||||||| || || ||||| || |||| | || |||||||| | |||
Sbjct 482263 CTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTC 482322
Query 153908 ATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTC 153967
| ||| | ||| || |||||| ||||| || | ||| ||||| | || ||
Sbjct 482323 AGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATC 482382
Query 153968 GCGCGCCTTGCAA---TCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATA 154021
||| || || | |||||| ||| | ||||| ||| | || | | |
Sbjct 482383 GCGGGC---GCGAACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAA 482436
Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCC 154078
| || |||||||| || || | ||| | ||| | |||||| ||| || || ||
Sbjct 482437 CACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 482496
Query 154079 CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123
||| ||||||| ||| | | |||||||| || |||| ||||||
Sbjct 482497 CTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGG 482541
>seq18
Length=564976
Score = 127 bits (140), Expect = 2e-24
Identities = 349/525 (66%), Gaps = 35/525 (7%)
Strand=Plus/Plus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGAT---CGAGAGCGACACCGCC 52385
|| ||| ||||| ||||| | ||||| | |||||||| ||| |||| | ||
Sbjct 230144 CCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGTCGACC 230203
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
| ||| |||| |||||||||| ||| |||||||| | || || || ||| ||
Sbjct 230204 T---TTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GC 230259
Query 52446 TTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504
||| ||| |||| || | | | | || | |||||||| ||||| || |||
Sbjct 230260 TTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAA 230319
Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACT---A 52558
|||| |||| ||||| ||||| || |||||||| |||||||| ||||| || || |
Sbjct 230320 CGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCA 230379
Query 52559 C---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615
| || || ||| | | | || | | | ||| || ||| || ||
Sbjct 230380 CCTGAACACCCGCCCTAGCAAGAAGCTTGTTGAGGA---------GATCAT---CACCGA 230427
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || |||||||| | || | || ||||| || ||||| |||||
Sbjct 230428 TGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCAT 230487
Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735
|||||| | |||| ||||||| |||||||| || || |||||| |||| ||
Sbjct 230488 GAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCT 230547
Query 52736 CGGGCAGCCA-AAGTACTTCAACGCTCGC--AATCCGTTTGAGTTTATGAACAACATTTC 52792
|| || | | ||| || | ||||| || || ||||| || ||| | ||||| ||
Sbjct 230548 TGG-CAACGAGAAGGTCTAC--CGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTC 230604
Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||| | || ||||||||||| ||||||||||| || || || ||
Sbjct 230605 GCTGGGCGGTAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 230649
>seq6
Length=1902109
Score = 116 bits (128), Expect = 4e-21
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| |||| ||| | ||| | | |||||||| || |||||||| |||
Sbjct 701197 GCCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 701138
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||||| ||||| || || ||||| | | |||| |||||||| |||||||||||
Sbjct 701137 AAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGG 701078
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
||||| || ||||| ||| | || | || |||| || | ||||| | ||| ||
Sbjct 701077 AATACCCTCCTTGTC-CTGAATCTTCGACTTGACATTG-TCAATCGTGTCCGACGATTCG 701020
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | ||| | || || |||||||| || || ||||| ||||||||
Sbjct 701019 ACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||| || ||||| || || || ||||
Sbjct 700935 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCG 700876
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || |||||||| ||||||||||| || || || ||||| ||| || || | |
Sbjct 700875 AAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 700816
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | ||| || | ||||||||||| | || | || || || || ||||| ||
Sbjct 700815 TTGT-CAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTT 700757
Query 138600 TACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 700756 GACAAAGATCTGCAT 700742
Score = 95.1 bits (104), Expect = 1e-14
Identities = 137/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| || |||||||||||| || ||| || ||||| || || || || | |||
Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| || ||||| || ||||| || || || || ||||| |||||| || | |||||
Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
| | ||||| | ||||| ||||||| || | ||| ||||| ||||| || || ||
Sbjct 107497 -CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 107439
Query 138604 AAAATCTGCAT 138614
|||||||||||
Sbjct 107438 AAAATCTGCAT 107428
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||||| |||| || | | | |||||||| || ||||||||||||
Sbjct 700455 CCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 700396
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||| || || ||||| | | || ||||| || |||||||||||
Sbjct 700395 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 700336
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || ||||| ||| || || | | || | |||||||| || || |||
Sbjct 700335 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 700276
Query 138568 TCGACCGTCAGCGTTTTACCAGTCA 138592
|| | ||| | || || || ||||
Sbjct 700275 TCTAGCGTGATGGTCTTGCCCGTCA 700251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262213901600
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