Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq19 172 5e-38 seq18 127 2e-24 seq6 116 4e-21 >seq19 Length=545716 Score = 172 bits (190), Expect = 5e-38 Identities = 726/1125 (65%), Gaps = 55/1125 (5%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || |||||||| |||| ||| || | | || | ||| |||| | | Sbjct 481443 GGTTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACG 481502 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| | ||||| ||||| || || || | |||| | || |||||||| ||| | Sbjct 481503 GCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAA 481562 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 || | || || |||| |||| | ||| || | | ||||| | || | ||| ||| Sbjct 481563 GCAGAAGCGAGTTGCGCACACCGTTCTGCTTGA-TCTGCTCCTTGAGCGACGCCCAGTCC 481621 Query 153207 CACAG--CGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGG 153264 || || ||| | || || | |||||||||||| |||| | | || || ||| Sbjct 481622 CAGAGGTCGCTG--GGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGG 481679 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCCTCG 153323 | || || ||||| |||| | || || | ||| | ||| || | | ||| Sbjct 481680 GCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTC-CATCGAGGCCGTC 481738 Query 153324 AGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTC 153383 || || | | ||| |||||||| ||| || | ||||| | || || | | Sbjct 481739 AGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGAC 481798 Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 || | |||||||||||| || ||||| || ||||||||||| | ||| || || ||| Sbjct 481799 TCAAAAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATG 481858 Query 153444 GGTCGATGCTTCTCGTTGC-----TGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGAT 153498 || || || | ||||| || ||||| || | ||| ||||| ||| | Sbjct 481859 GGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGC-----ACGGGGTAGTGGTTGACGT 481913 Query 153499 CGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAAT 153558 | || || ||| ||||||||||| || || || || | | | | || |||| ||| | Sbjct 481914 CAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGT 481973 Query 153559 CATA---GGTCATTTCGTCGACGCGTACGCATCGA-TTCACGGCAATAGACGCCAGATTA 153614 | || | || | | || | || || | ||| || || | || ||||| || Sbjct 481974 CGTACTCGTTCTTGTTGTAGTCG---AC-AAACGACGGCAGAGCCAGCGAAGCCAGGTTG 482029 Query 153615 CAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCA 153673 || ||||| ||| || |||| | | ||||| | ||||| | ||| |||||| || Sbjct 482030 CACACGGCAACCTCATCAGGCG-CACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCT 482088 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733 ||| |||| || | ||| ||||| ||||| ||||| ||| ||| | ||||| Sbjct 482089 GCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCAT 482148 Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC-- 153790 | |||| ||| |||||| || | || | || | || ||| | ||| || Sbjct 482149 GAACGGGTTGCCTGTCTCGGTCTGGGCCTCCA-GAATGGCGTACCACAGCTTCTGGGCCT 482207 Query 153791 ---TCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 ||| || ||| ||| |||||||| |||||| |||||||| |||||| Sbjct 482208 TGATCG-ACGCGCGGCC----ACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAA 482262 Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 153907 ||| ||||||||||| || || ||||| || |||| | || |||||||| | ||| Sbjct 482263 CTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTC 482322 Query 153908 ATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTC 153967 | ||| | ||| || |||||| ||||| || | ||| ||||| | || || Sbjct 482323 AGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATC 482382 Query 153968 GCGCGCCTTGCAA---TCCTCCGCGCC---CATGTTGCGTTTCAGATTGAGCACGCTATA 154021 ||| || || | |||||| ||| | ||||| ||| | || | | | Sbjct 482383 GCGGGC---GCGAACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAA 482436 Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCC 154078 | || |||||||| || || | ||| | ||| | |||||| ||| || || || Sbjct 482437 CACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACC 482496 Query 154079 CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGG 154123 ||| ||||||| ||| | | |||||||| || |||| |||||| Sbjct 482497 CTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGG 482541 >seq18 Length=564976 Score = 127 bits (140), Expect = 2e-24 Identities = 349/525 (66%), Gaps = 35/525 (7%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGAT---CGAGAGCGACACCGCC 52385 || ||| ||||| ||||| | ||||| | |||||||| ||| |||| | || Sbjct 230144 CCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGTCGACC 230203 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 | ||| |||| |||||||||| ||| |||||||| | || || || ||| || Sbjct 230204 T---TTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GC 230259 Query 52446 TTT-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 ||| ||| |||| || | | | | || | |||||||| ||||| || ||| Sbjct 230260 TTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAA 230319 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACT---A 52558 |||| |||| ||||| ||||| || |||||||| |||||||| ||||| || || | Sbjct 230320 CGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCGCA 230379 Query 52559 C---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 | || || ||| | | | || | | | ||| || ||| || || Sbjct 230380 CCTGAACACCCGCCCTAGCAAGAAGCTTGTTGAGGA---------GATCAT---CACCGA 230427 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || | || || |||||||| | || | || ||||| || ||||| ||||| Sbjct 230428 TGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCAT 230487 Query 52676 GAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 |||||| | |||| ||||||| |||||||| || || |||||| |||| || Sbjct 230488 GAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCT 230547 Query 52736 CGGGCAGCCA-AAGTACTTCAACGCTCGC--AATCCGTTTGAGTTTATGAACAACATTTC 52792 || || | | ||| || | ||||| || || ||||| || ||| | ||||| || Sbjct 230548 TGG-CAACGAGAAGGTCTAC--CGCTCCACGAACCCCTTTGACTTCATGGAGAACATCTC 230604 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | || ||||||||||| ||||||||||| || || || || Sbjct 230605 GCTGGGCGGTAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 230649 >seq6 Length=1902109 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||| ||| | ||| | | |||||||| || |||||||| ||| Sbjct 701197 GCCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 701138 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || || ||||| | | |||| |||||||| ||||||||||| Sbjct 701137 AAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGG 701078 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| | || | || |||| || | ||||| | ||| || Sbjct 701077 AATACCCTCCTTGTC-CTGAATCTTCGACTTGACATTG-TCAATCGTGTCCGACGATTCG 701020 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | ||| | || || |||||||| || || ||||| |||||||| Sbjct 701019 ACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||| || || || |||| Sbjct 700935 GACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCG 700876 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| ||||||||||| || || || ||||| ||| || || | | Sbjct 700875 AAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACA 700816 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||| || | ||||||||||| | || | || || || || ||||| || Sbjct 700815 TTGT-CAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTT 700757 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 700756 GACAAAGATCTGCAT 700742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| || |||||||||||| || ||| || ||||| || || || || | ||| Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | || ||||| || ||||| || || || || ||||| |||||| || | ||||| Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 | | ||||| | ||||| ||||||| || | ||| ||||| ||||| || || || Sbjct 107497 -CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACG 107439 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 107438 AAAATCTGCAT 107428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| |||| || | | | |||||||| || |||||||||||| Sbjct 700455 CCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 700396 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || ||||| | | || ||||| || ||||||||||| Sbjct 700395 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 700336 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| || || ||| Sbjct 700335 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 700276 Query 138568 TCGACCGTCAGCGTTTTACCAGTCA 138592 || | ||| | || || || |||| Sbjct 700275 TCTAGCGTGATGGTCTTGCCCGTCA 700251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262213901600