Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq6 123 2e-23 seq16 105 6e-18 >seq18 Length=564976 Score = 150 bits (166), Expect = 2e-31 Identities = 409/616 (66%), Gaps = 35/616 (6%) Strand=Plus/Plus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGCA 47038 ||||||| |||| | |||| || ||||| || || |||||| || | ||| Sbjct 230053 CATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCCTGCCCAGCG 230112 Query 47039 -AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 ||| || || || |||| |||| | ||| || ||| | ||| | |||||||| |||| Sbjct 230113 CAGCTAC-CTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAGGCCGACTGGG 230171 Query 47098 CCATGAAGTACATT---GAAAACGAAAACGTC-ACTCTGGCCGAACGTTTGATCGCTTTC 47153 | | |||| ||| || ||| ||| || | ||| | ||| || | || || Sbjct 230172 CTCTCAAGTGGATTTCCGACCGCGA----GTCGACCTTTGCCCAGCGTCTGGTGGCCTTT 230227 Query 47154 GCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT-GCGGCGATATTTTACATGAAAAC 47212 ||| ||||||||| |||||||||||||| ||||| || | || || | || | Sbjct 230228 GCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GCTTTCGCCTCCATTTTCTGGCTGCGCAA 230286 Query 47213 CAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCT 47272 || | |||||||| || || ||| ||||||||| || ||| | ||||| || || Sbjct 230287 GCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTGACGAGGGTCT 230346 Query 47273 GCACACCAACTTTGCCTGTCT---CTACT---AC---AACACTAGAGTCGATCAA-AAGT 47322 ||||||| |||||||||| || || || || ||||| | | | ||| ||| Sbjct 230347 GCACACCGACTTTGCCTGCCTGCTCTTCTCGCACCTGAACACCCGCC-CTAGCAAGAAGC 230405 Query 47323 TGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTT 47382 | | | | | | ||| |||| ||||| | |||||||| |||||| Sbjct 230406 TTGTTGAGGAGATCATCA------------CCGATGCCGTTGTCATTGAGAAGGAGTTCC 230453 Query 47383 TCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACA 47442 | ||||||||||||| | | | || |||||||| || | |||| |||||| Sbjct 230454 TGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACA 230513 Query 47443 TCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCG 47502 | || |||||||||||||| ||||| ||| || | ||| | |||| | || Sbjct 230514 TTGAGTTTGTCGCCGACCGTCTGCTGGTTGCCCTTGGCAACGAGAAGGTCTACCGCTCCA 230573 Query 47503 AGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGA 47562 ||| || || || || ||| | ||||| ||||| | || ||||||||||| ||||||| Sbjct 230574 CGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAGA 230633 Query 47563 AGCGCGTCGGCGAATA 47578 |||| || || || || Sbjct 230634 AGCGTGTTGGTGACTA 230649 >seq6 Length=1902109 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| || ||||| ||| || ||||| || |||||| ||||| Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | ||||||||||| || || ||||||||||||||| |||||| ||||| | ||| Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || |||| ||| | ||| || || ||||| || || || ||| Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 107435 ATCTGCAT 107428 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | |||||||| || || || ||||| ||| Sbjct 700968 CCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 700909 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| | |||| |||||||| || ||||| Sbjct 700908 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 700849 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||||| | || | ||| |||| ||| || Sbjct 700848 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACC 700789 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| ||||| || ||||| |||||||| Sbjct 700788 TCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| ||| | || ||||| || || || ||||||||| Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || ||||| |||||| |||||||| || ||||| Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || ||| ||||| | || | ||||||| ||||| Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACC 701017 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 701016 TCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| || Sbjct 700740 CCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 700681 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| | |||| |||||||| || ||||| Sbjct 700680 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 700621 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| ||||| ||| ||| |||| |||||| Sbjct 700620 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGT-CGATGGTATCCGACGACTCGAC 700562 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||||| || | || |||||||| || || || || Sbjct 700561 TTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 700526 >seq16 Length=638914 Score = 105 bits (116), Expect = 6e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| || ||||| ||| || ||||| || |||||| ||||| Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 | |||||||| || || || ||||||||||||||| ||| || ||||| |||| || Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TC 520812 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||||| |||||| || | ||| | || || || ||||| || || || || Sbjct 520811 GATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 520752 Query 127105 AATCTGC 127111 | | ||| Sbjct 520751 ACTGTGC 520745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500621687200