Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq19 91.5 1e-13 seq6 91.5 1e-13 >seq19 Length=545716 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 124105 TGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAAC 124164 |||||| |||||||||||||| || || | | | ||||||||| |||| || Sbjct 481661 TGCAGTTCGACATGTGGAATGTCACGCCCAGCGACCTCTGGGACTGG-GCGTCGCTCAAG 481603 Query 124165 AACGCATATCGAC--GCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGC 124222 | ||| ||| | | ||||| |||| |||||||| || | ||| ||||||||||| Sbjct 481602 GA-GCAGATCAAGCAGAACGGTGTGCGCAACTCGCTTCTGCTTGCGCCGATGCCGACGGC 481544 Query 124223 AACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTA 124282 | ||| | || ||| | || |||||||| | ||| ||||||| |||| ||| | || Sbjct 481543 CAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTTGAGCCGTACACTTCCAACATTTA 481484 Query 124283 CGTGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 | ||| || ||| | || ||||| || || || Sbjct 481483 CCAGCGTCGTGTGCTGGCTGGCGAGTTCCAGGT 481451 >seq6 Length=1902109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || ||||| ||||| || || || Sbjct 700743 ATACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCA 700684 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || ||| | |||| || ||||||||||| Sbjct 700683 GAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGA 700624 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || ||||| || |||| || | || | ||| || || ||||| Sbjct 700623 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTC 700565 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 |||||||||||||| || |||||||| || || || || Sbjct 700564 GACTTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 700526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || |||||||| || || ||||| ||||| || || ||| Sbjct 700971 ATACCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCG 700912 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || ||| | |||| || ||||||||||| Sbjct 700911 GAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGA 700852 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || || || || |||| || | ||| || || ||||| Sbjct 700851 GGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCC 700792 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| ||||| || ||||| || ||||| Sbjct 700791 ACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003030498800