Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq19 197 2e-45 >seq19 Length=545716 Score = 197 bits (218), Expect = 2e-45 Identities = 466/685 (68%), Gaps = 18/685 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACAT 203895 || ||| || ||||||||||||| | | |||| |||||| | | ||| |||||||| Sbjct 481096 CTGGTCAACAGTGAACTGAATGGG---CGCCGCAGCCGCCTGCGTACGCAGGTAGTACAT 481152 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 ||| ||||| || ||| || ||| |||| | | ||||||| | | |||| || Sbjct 481153 GCCCGTCTTGAGACCCAGCTTCCAGCCCGCA-AAGTGCATGCTGGTAATCTTGCCCATCG 481211 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 | ||||| |||||||||||| || |||||| |||||||| |||||| || ||||| Sbjct 481212 TAGGGTCCTTCATGTGAATGTTGAGCGACTGGGACTGGTCGAT-AAAGGCACCACGATCA 481270 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCT 204072 || ||||| | | || || |||||||||||||||||| |||||| ||| || || | Sbjct 481271 GCAGCCATCTGCACAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCT-T 481329 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | | | || | || | || || ||| || ||||| || || || | | Sbjct 481330 GATATCGT-CGGGAATGCTGGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGT 481388 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | | ||| ||||| |||| | ||| || |||| ||| ||||||| Sbjct 481389 TCTTCATGTTGTCCGACCACAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGA 481448 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || | |||||| | || | | | |||| ||| | || || | Sbjct 481449 CAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAA 481508 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | |||||||||||| | |||||| | ||||||||||| ||||| || || || || | Sbjct 481509 AGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAA 481568 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATC 204370 | |||||||||||||||| | | || |||| ||| || || | |||||| | Sbjct 481569 GCGAGTTGCGCACACCGTTCTGCTTGA-TCTGCTCCTTGAGCGACGCCCAGTCCCAGAGG 481627 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 | ||||| | || ||||||||||||||| | |||||| ||| || || ||| Sbjct 481628 TCGCTGGGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCC 481687 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCA-CGAGGCGGCCATGGCGTG 204489 | ||||| | || | ||||| | || || || || |||||| | || ||| Sbjct 481688 TCATACGTAGAGTAGGTACCCTCCTCCT-TGGCAATTTCCATCGAGGCCGTCAGGGCAGC 481746 Query 204490 ATAGTACATGGTCTCAAAGATCTGA 204514 | ||| ||||| |||||||||||| Sbjct 481747 GTGGTAGATGGTTTCAAAGATCTGA 481771 Score = 129 bits (142), Expect = 9e-25 Identities = 449/684 (66%), Gaps = 24/684 (4%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| ||||||||||| ||||||||| | Sbjct 482099 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 482158 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCT----CCACTTG 205038 || |||| |||| | ||||||| | ||||| | | |||| | || | Sbjct 482159 CCTGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGACGCG 482218 Query 205039 CTTC-ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | | ||| | || ||| |||||| ||| |||||| ||| |||| || |||| Sbjct 482219 CGGCCACGGCCCTC--TTG---CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGT 482273 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCA--CATCTGATCGTC 205155 | || ||| || || || | ||||| |||||||| | ||| || | | || || Sbjct 482274 AGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGC-GTTCTTC 482332 Query 205156 TTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG-GCCGTAAAACAGATCACGGGCCC 205214 | || | || ||| || || ||| |||||||| ||| ||| ||||| ||||| | Sbjct 482333 TCG-ACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAA-AGATCGCGGGCGC 482390 Query 205215 TAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCC 205274 || | || | || ||||||| || ||| || | | | || ||||||| Sbjct 482391 GAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCC 482450 Query 205275 ACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGC 205334 ||||||| | | | ||| | || || || | |||||| ||||||||||| || || Sbjct 482451 ACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGC 482510 Query 205335 GAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 | | | |||||| || |||||||| || | | |||||||| ||| ||||| |||| Sbjct 482511 GGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGC 482570 Query 205395 TGTTGATGGCCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGA 205452 | ||| |||||| || | | || |||| || | || || || |||| Sbjct 482571 CGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTG--AGACCGATACCACCAGC 482628 Query 205453 ACACTTGGCGATCTGGGCGC-ACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGT 205511 ||||| |||| || | | ||||| ||||| ||| ||||| |||| || || | Sbjct 482629 CATCTTGGAGATCATAGCACAAGTCTTG-AGAGTATCGTAAATGCCCTCGATCGAGTCTT 482687 Query 205512 CCGCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAG 205570 || || |||| ||||| |||| || | ||||| || | || ||||||| ||| Sbjct 482688 CCTTCA-TGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAA 482746 Query 205571 AGCGTGGGGCTGGCGTGGCTGAAG 205594 || ||||| ||||||| ||||| Sbjct 482747 AGAGTGGGCGAGGCGTGGGTGAAG 482770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154901816800