Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 3e-29
seq16 114 1e-20
>seq6
Length=1902109
Score = 143 bits (158), Expect = 3e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||||| ||| |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| |||| ||||||||||| | || | || |||||||||| |
Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|||||| ||||| | | | || || || ||||| || | ||||| || ||
Sbjct 700830 ATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTT 700771
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || |||||||| |||||
Sbjct 700770 CCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 140 bits (154), Expect = 4e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||||||| || |||||| ||||| ||||| ||||| || || || |
Sbjct 701184 CGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCA 701125
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||||||| || || || |||| ||||||||||| | || | | |||||||
Sbjct 701124 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 701065
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||||| | | | |||||| |||||| || || | |||||||
Sbjct 701064 TCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATG 701005
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| |||||||| || |||||||| |||||
Sbjct 701004 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 113 bits (124), Expect = 5e-20
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| ||||| || | || || |||||||| || |||||
Sbjct 700420 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 700361
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || |||||||| | || | | |||||||||| |||||| ||||| |||
Sbjct 700360 AATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 700302
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | |||||| ||||| || || | ||||||||| ||||||||||
Sbjct 700301 TGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTGATGGTCTTGCCCGTCA 700251
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| |||||||| | || || ||||||||||| ||||| |
Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||||||| || | || | || |||||||||| ||| || ||||| |
Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | || || || || |||||||| || || || |
Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438
Query 46584 AGATTTGCATTTTG 46597
| || ||||| |||
Sbjct 107437 AAATCTGCATCTTG 107424
Score = 111 bits (122), Expect = 2e-19
Identities = 149/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| |||||| ||||| |||||||| || |||||||| |
Sbjct 700729 ACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACC 700670
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||||||||| |||| ||||||||||| | || | | ||||||
Sbjct 700669 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 700610
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| ||||| ||| | | | || || ||| || || || | || |
Sbjct 700609 GTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAA 700551
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581
|||| ||||| || || || || ||
Sbjct 700550 TGGTCTTGCCGGTGAGGGTCTTGAC 700526
>seq16
Length=638914
Score = 114 bits (126), Expect = 1e-20
Identities = 141/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455
|| || | |||| || || ||||||||||| || ||||| | || || |||||||||||
Sbjct 520940 TGAACGCACCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCC 520881
Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515
||||| |||| ||||||||||| | || | || |||||||||| |||||| |||
Sbjct 520880 AGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 520821
Query 46516 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574
|| ||| | | | |||||| || || || |||| || ||||| || |||||||| |
Sbjct 520820 GA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 520762
Query 46575 TTTTAACAAA 46584
| || || ||
Sbjct 520761 TCTTGACGAA 520752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238188035600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |