Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq16 114 1e-20 >seq6 Length=1902109 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| ||| |||||| ||||| ||||||||||| |||||||| | || || Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||| ||||||||||| | || | || |||||||||| | Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||||| | | | || || || ||||| || | ||||| || || Sbjct 700830 ATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTT 700771 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || |||||||| ||||| Sbjct 700770 CCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||||||| || |||||| ||||| ||||| ||||| || || || | Sbjct 701184 CGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCA 701125 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || |||| ||||||||||| | || | | ||||||| Sbjct 701124 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 701065 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| |||||| || || | ||||||| Sbjct 701064 TCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATG 701005 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || |||||||| ||||| Sbjct 701004 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 113 bits (124), Expect = 5e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || || |||||||| || ||||| Sbjct 700420 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 700361 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 700360 AATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 700302 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | |||||| ||||| || || | ||||||||| |||||||||| Sbjct 700301 TGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTGATGGTCTTGCCCGTCA 700251 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| |||||||| | || || ||||||||||| ||||| | Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||| || | || | || |||||||||| ||| || ||||| | Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | || || || || |||||||| || || || | Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438 Query 46584 AGATTTGCATTTTG 46597 | || ||||| ||| Sbjct 107437 AAATCTGCATCTTG 107424 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | ||| |||||| ||||| |||||||| || |||||||| | Sbjct 700729 ACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACC 700670 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||||||||| | || | | |||||| Sbjct 700669 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 700610 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| ||||| ||| | | | || || ||| || || || | || | Sbjct 700609 GTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAA 700551 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAAC 46581 |||| ||||| || || || || || Sbjct 700550 TGGTCTTGCCGGTGAGGGTCTTGAC 700526 >seq16 Length=638914 Score = 114 bits (126), Expect = 1e-20 Identities = 141/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 46396 TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCC 46455 || || | |||| || || ||||||||||| || ||||| | || || ||||||||||| Sbjct 520940 TGAACGCACCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCC 520881 Query 46456 GGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 ||||| |||| ||||||||||| | || | || |||||||||| |||||| ||| Sbjct 520880 AGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 520821 Query 46516 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574 || ||| | | | |||||| || || || |||| || ||||| || |||||||| | Sbjct 520820 GA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGG 520762 Query 46575 TTTTAACAAA 46584 | || || || Sbjct 520761 TCTTGACGAA 520752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238188035600