Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 315 7e-81 seq6 111 2e-19 seq16 105 7e-18 >seq18 Length=564976 Score = 315 bits (348), Expect = 7e-81 Identities = 568/824 (69%), Gaps = 15/824 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| || ||| | ||| || || |||||||| Sbjct 230634 TTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTC 230575 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | | |||| ||| | |||| | || | || ||||| | |||||| || ||| Sbjct 230574 GTGGAGCGGTAGACCTTCTCGTTGCCAA---GGGCAACCAGCAGACGGTCGGCGACAAAC 230518 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 || ||||| ||| |||| ||| || | || ||||| |||| ||||| || || Sbjct 230517 TCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCGCAA-GGCAGAGCCTC 230459 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | ||| ||| | || || ||||||| ||| ||| ||| || | Sbjct 230458 GGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATGATCTCCTCAACAAGCTTCTT 230399 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || || ||| ||| | || ||| ||||||||| |||| ||||| Sbjct 230398 GCTAGGGCGGGTGTTCAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGACCCTC 230339 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | ||||| || |||||| || |||| |||||||| || || || || || Sbjct 230338 GTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTGCGCAG 230279 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||||||| |||||| ||||||| ||||||||||| || || ||||| Sbjct 230278 CCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCCAC 230219 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||| |||| | | || || | || | || ||||| || ||||| |||||||| Sbjct 230218 CAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTT 230159 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | ||| || || || ||||||||||| |||| | || | | || ||| Sbjct 230158 GCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAG--GTAGCTGCGCTGGGCAGGC 230101 Query 133161 ACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218 | | ||||||||||||||| ||| ||| | |||||||| | ||||||||| | Sbjct 230100 TCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATG 230041 Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || |||||||| ||||| || |||||| | ||| || || | |||||||||| Sbjct 230040 ATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCACCCGAGAAACGCTCG 229981 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| || |||||||| |||||||| || ||||| |||||||| |||||| |||| Sbjct 229980 ACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCGAAGAAGGCCAGGACGTGCGAGATG 229921 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || | |||| | ||||| ||| | ||||||| | ||||||||||| || Sbjct 229920 AAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTTGGACAGATCA 229861 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 229860 ATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 229817 >seq6 Length=1902109 Score = 111 bits (122), Expect = 2e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || || ||| |||| || ||| || Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | || ||||||| ||||| ||||| |||||| | || Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 107604 Query 38421 AACATCCAAAAGG-AAGCGACGCTGCAT 38447 |||||||| |||| ||| || |||||| Sbjct 107605 AACATCCAGAAGGTCAGCAACCCTGCAT 107632 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 ||| |||| || || ||||| ||||| ||||| || |||| |||||| | | || | | Sbjct 700520 ATAGTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACC 700579 Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368 | | |||| | || || || | ||||| ||||| ||||| | ||||| ||||| Sbjct 700580 ATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCG 700638 Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428 || |||| ||| ||||| ||||| || || | ||||| || |||||||||||||| Sbjct 700639 TCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCA 700698 Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| | || || || ||||||| ||| Sbjct 700699 GAAGGAGTCTACCCTCCACCTGGTGCTTCGT 700729 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || ||||| | | Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || || | ||||| ||||| ||||| | ||||| Sbjct 701030 GACACGATTGACAATG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 701088 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || |||||||| || | || || || ||| ||||| Sbjct 701089 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAA 701148 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| |||| |||||| |||| ||||| || | || |||| Sbjct 701149 CATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGGCC 701198 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 |||||||| |||||||| | || ||||| | |||||| | | | |||| | || Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACG-TCAAGTC 700311 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| ||||| | ||||| || || ||||||| ||| || || Sbjct 700312 CAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAA 700371 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| || | || || || ||||||||||||||| ||||| | || || || Sbjct 700372 GCAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 700431 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | || |||||| || | || || Sbjct 700432 CCTAGTCCTGCGTCTGCGTGGTGG 700455 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || || |||||| | || || ||| | | Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || || | ||||| || |||||||||| Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || |||||| |||| || || Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTCCG 700956 >seq16 Length=638914 Score = 105 bits (116), Expect = 7e-18 Identities = 134/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 520752 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 520811 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| || Sbjct 520812 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 520870 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| |||||||| || | |||||||| |||||||||||| || || Sbjct 520871 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 520930 Query 38432 GG 38433 || Sbjct 520931 GG 520932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172612435200