Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq18 315 7e-81
seq6 111 2e-19
seq16 105 7e-18
>seq18
Length=564976
Score = 315 bits (348), Expect = 7e-81
Identities = 568/824 (69%), Gaps = 15/824 (2%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || ||| || ||| | ||| || || ||||||||
Sbjct 230634 TTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATGAAGTCAAAGGGGTTC 230575
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | | |||| ||| | |||| | || | || ||||| | |||||| || |||
Sbjct 230574 GTGGAGCGGTAGACCTTCTCGTTGCCAA---GGGCAACCAGCAGACGGTCGGCGACAAAC 230518
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
|| ||||| ||| |||| ||| || | || ||||| |||| ||||| || ||
Sbjct 230517 TCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCGCAA-GGCAGAGCCTC 230459
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
||| || || | ||| ||| | || || ||||||| ||| ||| ||| || |
Sbjct 230458 GGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATGATCTCCTCAACAAGCTTCTT 230399
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| || || || ||| ||| | || ||| ||||||||| |||| |||||
Sbjct 230398 GCTAGGGCGGGTGTTCAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGCAGACCCTC 230339
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
||| | ||||| || |||||| || |||| |||||||| || || || || ||
Sbjct 230338 GTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTTGCGCAG 230279
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || |||| ||||||| |||||| ||||||| ||||||||||| || || |||||
Sbjct 230278 CCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCCAC 230219
Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
||| |||| | | || || | || | || ||||| || ||||| ||||||||
Sbjct 230218 CAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTT 230159
Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160
| ||| || || || ||||||||||| |||| | || | | || |||
Sbjct 230158 GCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAG--GTAGCTGCGCTGGGCAGGC 230101
Query 133161 ACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218
| | ||||||||||||||| ||| ||| | |||||||| | ||||||||| |
Sbjct 230100 TCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTCCATCATG 230041
Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278
|| || |||||||| ||||| || |||||| | ||| || || | ||||||||||
Sbjct 230040 ATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTGGACCTCACCCGAGAAACGCTCG 229981
Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338
|||| || |||||||| |||||||| || ||||| |||||||| |||||| ||||
Sbjct 229980 ACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCGAAGAAGGCCAGGACGTGCGAGATG 229921
Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395
|| | |||| | ||||| ||| | ||||||| | ||||||||||| ||
Sbjct 229920 AAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTTGGACAGATCA 229861
Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||||| | ||||| || || |||||||| || ||||||||
Sbjct 229860 ATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 229817
>seq6
Length=1902109
Score = 111 bits (122), Expect = 2e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 107425 AAGATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 107484
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | || ||||||| ||||| ||||| |||||| | ||
Sbjct 107485 TCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGAT 107544
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||
Sbjct 107545 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTAC 107604
Query 38421 AACATCCAAAAGG-AAGCGACGCTGCAT 38447
|||||||| |||| ||| || ||||||
Sbjct 107605 AACATCCAGAAGGTCAGCAACCCTGCAT 107632
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309
||| |||| || || ||||| ||||| ||||| || |||| |||||| | | || | |
Sbjct 700520 ATAGTCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACC 700579
Query 38310 GTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCG 38368
| | |||| | || || || | ||||| ||||| ||||| | ||||| |||||
Sbjct 700580 ATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCG 700638
Query 38369 GCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 38428
|| |||| ||| ||||| ||||| || || | ||||| || ||||||||||||||
Sbjct 700639 TCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCA 700698
Query 38429 AAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| | || || || ||||||| |||
Sbjct 700699 GAAGGAGTCTACCCTCCACCTGGTGCTTCGT 700729
Score = 102 bits (112), Expect = 8e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||||| || ||||| |||||||| | || ||||| | |
Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | || || || | ||||| ||||| ||||| | |||||
Sbjct 701030 GACACGATTGACAATG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 701088
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || |||||||| || | || || || ||| |||||
Sbjct 701089 GCAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAA 701148
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|||||| ||||| |||| |||||| |||| ||||| || | || ||||
Sbjct 701149 CATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGGCC 701198
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|||||||| |||||||| | || ||||| | |||||| | | | |||| | ||
Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACG-TCAAGTC 700311
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| |||| ||||| ||||| ||||| | ||||| || || ||||||| ||| || ||
Sbjct 700312 CAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAA 700371
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|||||||| || | || || || ||||||||||||||| ||||| | || || ||
Sbjct 700372 GCAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCA 700431
Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470
| || |||||| || | || ||
Sbjct 700432 CCTAGTCCTGCGTCTGCGTGGTGG 700455
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || || |||||| | || || ||| | |
Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| ||||| ||||| | |||||
Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| ||||| || || | ||||| || ||||||||||
Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || |||||| |||| || ||
Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGTTCTCCG 700956
>seq16
Length=638914
Score = 105 bits (116), Expect = 7e-18
Identities = 134/182 (74%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| || | |||| |
Sbjct 520752 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATC 520811
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| ||||| ||||| |||||| | ||||| ||||| ||
Sbjct 520812 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 520870
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| |||||||| || | |||||||| |||||||||||| || ||
Sbjct 520871 GATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAA 520930
Query 38432 GG 38433
||
Sbjct 520931 GG 520932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172612435200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |