Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq10 199 5e-46
seq5 176 6e-39
>seq10
Length=914541
Score = 199 bits (220), Expect = 5e-46
Identities = 283/398 (71%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||| ||| || || || ||||| | ||||| || |||||||| | |||
Sbjct 251517 TCCTCACCACCCAGGTGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCATCCTCA 251458
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | || || ||||| || |||||||||||||| || || || || |||||
Sbjct 251457 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 251398
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
||| | || ||||| || |||||||| || || || || || || || || || ||
Sbjct 251397 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTGATG 251338
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| ||| ||| || || |||||| | || || || || || || || || |||
Sbjct 251337 ATACGCAGAACGTTAAGACCGGCAATAAGACCGGCGTCCTTGGTGGCCTGACGCTGAGAA 251278
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| ||||| || ||||| || ||||| || | | || | |||| || |||||
Sbjct 251277 TCGTTGAAGTAAGCGGGGACAGTGACGACAGCATTGTTAACGCTGGTACCCAGGTACGAC 251218
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| ||| | || ||| ||||| || ||||| || || ||||| |||| | |||||
Sbjct 251217 TCAGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTGAACTGC 251158
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || ||||| || || || || | ||| ||||| ||
Sbjct 251157 TTGGTCTCACCCTTGAACTCGACCTGAATGATGGGCTT 251120
>seq5
Length=2148850
Score = 176 bits (194), Expect = 6e-39
Identities = 504/768 (66%), Gaps = 38/768 (5%)
Strand=Plus/Plus
Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066
|||| ||||| | ||| |||| ||||| | || ||||| ||||| ||||||||||||
Sbjct 343353 CCTT-ACCCGACAGGATACCGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGG 343411
Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126
|| || | || | ||| | || ||||| || | || || | || | || || ||
Sbjct 343412 TTGATGGACTTCTCCAGCTTCTTGCCGTTGAAGAAGTCAGACAGCAGCTTCTGGATCTTG 343471
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA----- 7181
||||| || || || |||||||||| ||||| || | || | | || ||||
Sbjct 343472 GGGATACGGGTGGAACCACCGACCAGGACGATCTCGTCGACCTGCTTCTTGTCGAGGCCA 343531
Query 7182 ---TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238
|| || || || | | || || |||| | | ||| | ||
Sbjct 343532 GCATCCTTCAGGACGGAGG--------CAACGGGCTCCAGAGTGCCAGCGAA---GGCCT 343580
Query 7239 TACA---CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTC 7293
| | ||| ||||| ||||| |||||||| || || | || || || | |||||
Sbjct 343581 TGGAGTTCAGCTCCTCGAAACGGGCACGGGTGATC--TGGACAGTGAAGTCCTCACCGTC 343638
Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353
| | | | ||||| |||||||| || || || ||||| | || ||||| || ||
Sbjct 343639 GAAGAGAGTGTCAATCTCAATGGTGGTCTGAGCACCGGAAGACAGAGTACGCTTGGCACG 343698
Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413
||| || || || || | |||||| |||||||| | | ||| || | ||| |||||
Sbjct 343699 CTCGCAAGCGGTACGGAGACGACGCAGGGCACGGGCATCACCAGACAGATCCTTCTTGGT 343758
Query 7414 TTTACGTTTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472
|| || | || || | | ||| ||| | | || | | ||||| || | |||||
Sbjct 343759 CTTGCGGGTGAAGTCCTTCTTGCAGTAGTCCA-GCAGGTTGGTGTCGAAGTCCTGACCAC 343817
Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532
||| ||| || || || ||||| || ||||| |||| ||| || | ||||| | ||
Sbjct 343818 CCAGGTGAGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGCA 343877
Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592
|| ||||| || |||||||||||||| || | || || ||||| || | |||
Sbjct 343878 GGGAGACATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCT--TCTC 343935
Query 7593 TGTTCTTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646
| |||| | |||||||| ||||| || || || || || || || || ||||
Sbjct 343936 CGA-CTTACCAGCACCCAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATAC 343994
Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706
| || ||||||||||||||| | | ||||| || || || || || || ||||
Sbjct 343995 GCAGGACGTTCAGGCCAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGT 344054
Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| |||||||| ||||| || | || || | | ||| ||||| ||||
Sbjct 344055 TGAAGTAGGCGGGGACGGTGATAACAGCCTTCTCGACCTTCTTGCCGA 344102
Score = 143 bits (158), Expect = 3e-29
Identities = 228/327 (70%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||| ||| || || || || || || || ||||||| |||
Sbjct 583215 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTGGCCAGAACCTCAAAGACACCG 583274
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | || || ||||| || |||||||||||||||||| | | || |
Sbjct 583275 CTCTCAATGGACAGCAGAGACACATCGAAGGTACCACCACCCAGGTCATAGACGATAATC 583334
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || | | | | |||| || |||||||| || ||||| || || || || ||
Sbjct 583335 TGGCGCTCACCAGCGTCGGTCTTGTCCAGACCGTAAGCAATAGCAGCGGCGGTGGGCTCG 583394
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | |||||| || |||||| || ||||| || | || || || || || || ||
Sbjct 583395 TTGACAATACGGAGGATGTTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGCCTGACGC 583454
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| | ||||| |||||||| ||||| || || || |||| ||||| |||| || ||
Sbjct 583455 TGGGCGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCGTGGGTGACGGTCTTGCCCAGG 583514
Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783
|| | || || | || ||||| |||
Sbjct 583515 TAAGCCTCGGCAACCTCCTTCATCTTG 583541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132561825200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |