Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10 199 5e-46 seq5 176 6e-39 >seq10 Length=914541 Score = 199 bits (220), Expect = 5e-46 Identities = 283/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| ||| || || || ||||| | ||||| || |||||||| | ||| Sbjct 251517 TCCTCACCACCCAGGTGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCATCCTCA 251458 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || || ||||| || |||||||||||||| || || || || ||||| Sbjct 251457 ATGGTCAGCAGAGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 251398 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 ||| | || ||||| || |||||||| || || || || || || || || || || Sbjct 251397 TCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCGGCAGTGGGCTCGTTGATG 251338 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||| || || |||||| | || || || || || || || || ||| Sbjct 251337 ATACGCAGAACGTTAAGACCGGCAATAAGACCGGCGTCCTTGGTGGCCTGACGCTGAGAA 251278 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| ||||| || ||||| || ||||| || | | || | |||| || ||||| Sbjct 251277 TCGTTGAAGTAAGCGGGGACAGTGACGACAGCATTGTTAACGCTGGTACCCAGGTACGAC 251218 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || ||| | || ||| ||||| || ||||| || || ||||| |||| | ||||| Sbjct 251217 TCAGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCAGGAGTGAACTGC 251158 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || | ||| ||||| || Sbjct 251157 TTGGTCTCACCCTTGAACTCGACCTGAATGATGGGCTT 251120 >seq5 Length=2148850 Score = 176 bits (194), Expect = 6e-39 Identities = 504/768 (66%), Gaps = 38/768 (5%) Strand=Plus/Plus Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 |||| ||||| | ||| |||| ||||| | || ||||| ||||| |||||||||||| Sbjct 343353 CCTT-ACCCGACAGGATACCGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGG 343411 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 || || | || | ||| | || ||||| || | || || | || | || || || Sbjct 343412 TTGATGGACTTCTCCAGCTTCTTGCCGTTGAAGAAGTCAGACAGCAGCTTCTGGATCTTG 343471 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA----- 7181 ||||| || || || |||||||||| ||||| || | || | | || |||| Sbjct 343472 GGGATACGGGTGGAACCACCGACCAGGACGATCTCGTCGACCTGCTTCTTGTCGAGGCCA 343531 Query 7182 ---TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCA 7238 || || || || | | || || |||| | | ||| | || Sbjct 343532 GCATCCTTCAGGACGGAGG--------CAACGGGCTCCAGAGTGCCAGCGAA---GGCCT 343580 Query 7239 TACA---CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG--AAATCAACGCCGTC 7293 | | ||| ||||| ||||| |||||||| || || | || || || | ||||| Sbjct 343581 TGGAGTTCAGCTCCTCGAAACGGGCACGGGTGATC--TGGACAGTGAAGTCCTCACCGTC 343638 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 | | | | ||||| |||||||| || || || ||||| | || ||||| || || Sbjct 343639 GAAGAGAGTGTCAATCTCAATGGTGGTCTGAGCACCGGAAGACAGAGTACGCTTGGCACG 343698 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 ||| || || || || | |||||| |||||||| | | ||| || | ||| ||||| Sbjct 343699 CTCGCAAGCGGTACGGAGACGACGCAGGGCACGGGCATCACCAGACAGATCCTTCTTGGT 343758 Query 7414 TTTACGTTTAAACTCTTCAGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 || || | || || | | ||| ||| | | || | | ||||| || | ||||| Sbjct 343759 CTTGCGGGTGAAGTCCTTCTTGCAGTAGTCCA-GCAGGTTGGTGTCGAAGTCCTGACCAC 343817 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACA 7532 ||| ||| || || || ||||| || ||||| |||| ||| || | ||||| | || Sbjct 343818 CCAGGTGAGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTCAGCA 343877 Query 7533 ACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTT 7592 || ||||| || |||||||||||||| || | || || ||||| || | ||| Sbjct 343878 GGGAGACATCGAAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCT--TCTC 343935 Query 7593 TGTTCTTATCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | |||| | |||||||| ||||| || || || || || || || || |||| Sbjct 343936 CGA-CTTACCAGCACCCAGACCGTAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATAC 343994 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 | || ||||||||||||||| | | ||||| || || || || || || |||| Sbjct 343995 GCAGGACGTTCAGGCCAGCAATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGT 344054 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | |||||||| ||||| || | || || | | ||| ||||| |||| Sbjct 344055 TGAAGTAGGCGGGGACGGTGATAACAGCCTTCTCGACCTTCTTGCCGA 344102 Score = 143 bits (158), Expect = 3e-29 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || || || || ||||||| ||| Sbjct 583215 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTGGCCAGAACCTCAAAGACACCG 583274 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | || || ||||| || |||||||||||||||||| | | || | Sbjct 583275 CTCTCAATGGACAGCAGAGACACATCGAAGGTACCACCACCCAGGTCATAGACGATAATC 583334 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || | | | | |||| || |||||||| || ||||| || || || || || Sbjct 583335 TGGCGCTCACCAGCGTCGGTCTTGTCCAGACCGTAAGCAATAGCAGCGGCGGTGGGCTCG 583394 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | |||||| || |||||| || ||||| || | || || || || || || || Sbjct 583395 TTGACAATACGGAGGATGTTCAGACCGGCAATGGTACCGGCGTCCTTGGTAGCCTGACGC 583454 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || || || |||| ||||| |||| || || Sbjct 583455 TGGGCGTCGTTGAAGTAGGCAGGGACAGTGACAACGGCGTGGGTGACGGTCTTGCCCAGG 583514 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 || | || || | || ||||| ||| Sbjct 583515 TAAGCCTCGGCAACCTCCTTCATCTTG 583541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132561825200