Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq19 253 3e-62 seq18 104 3e-17 seq14 89.7 6e-13 >seq19 Length=545716 Score = 253 bits (280), Expect = 3e-62 Identities = 905/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGA-AGATATTGATTCTGT 111670 || ||| ||||| | ||||| || || |||| || || || ||| |||| ||| Sbjct 482862 CCCCAGCACATGATTATGCGTGTTGCTGTCGGCATTTGGGGTGACAGAG-TTGACCGTGT 482804 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | | ||||| ||| || ||||| | | |||| |||||| | || || || || Sbjct 482803 TATTGAGACGTACAACCTCATGTCTAGCAAGTTCTTCACCCACGCCTCGCCCACTCTTTT 482744 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || | || ||||| ||| ||||| ||| | ||||| || Sbjct 482743 CAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATGAAGGAAGA 482684 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | |||||||||| ||||||| ||||| ||||| ||| |||||| Sbjct 482683 CTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGATCTCCAAGATGGCTGG 482624 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||||||||| | | |||| | | |||| | |||||| || || ||| Sbjct 482623 TGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACT--GGCTCGTACATTGCCGGCACA 482566 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| || | ||||| ||||| ||||| || || || ||| ||| || ||||| Sbjct 482565 AACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCGCTAC 482506 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||| | ||| ||| || | | || | || || ||||| |||||| Sbjct 482505 GTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCAC 482446 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 |||||| | | ||||||||||| |||| ||||| || | ||||||| || | Sbjct 482445 GCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCC 482386 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 |||||||| ||| || || |||||||| ||||||||||||||| | || ||| ||| Sbjct 482385 CGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAAC 482326 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 | | ||| | || | || || || || || || || | ||| | || ||| Sbjct 482325 GCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAG 482266 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGCGACTGCGACGGTGCC 112264 |||||||| ||||| ||| |||||||||| |||| | || ||| | ||| || | | Sbjct 482265 GAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGC-GCGTCGAT-CA 482208 Query 112265 AGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 || | || | ||||| | || ||||| || | || |||||||| || | || | | Sbjct 482207 AGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCA 482148 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 |||| ||||| ||| ||| |||| ||||| || || ||||| ||||| ||| | Sbjct 482147 TGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCA 482088 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | |||||||| || || || || | || | | |||||| || ||||| | Sbjct 482087 GCTCCAACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGAGGTTGCCGTGTGCA 482028 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTAT 112502 |||| || || | ||||| || || ||| || | || | || || | || | Sbjct 482027 ACCTGGCTTCGCTGGCTCTGCCGTCGTTTGTCGACTACAACAAGAACGA-GTACGACTTC 481969 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | || || ||||| || || || ||| ||||| ||| | | ||||| Sbjct 481968 CAGAAGCTGCACGAGGTCACCAAGGTTGTTGTGCGCAACCTGAACCGCATCATTGACGTC 481909 Query 112563 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || |||||||| |||| || | || || ||| | |||||||| |||||| Sbjct 481908 AACCACTACCCCGTGCCTGAG---GCCCACAACAGCAACATGCGTCACCGTCCCATTGGT 481852 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TTTGATT 112674 | ||||| || ||||| || |||| ||| || ||| |||| ||||| | Sbjct 481851 GTTGGTGTTCAGGGTCTGGCTGATGCCTTC-----CTGGCGCTGCGCATGCCTTTTGAGT 481797 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 | | ||| || | |||| | | || ||||| || || || ||||| || || Sbjct 481796 CTGCCGAGGCTCGCAAGCTCAACACTCAGATCTTTGAAACCATCTACCACGCTGCCCTGA 481737 Query 112735 AGG-CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || | | | | | ||| || ||| || ||| | || || | ||||||||| || Sbjct 481736 CGGCCTCGATGGAAATTGCCA-AGGAGGAGGGTACCTACTCTACGTATGAGGGTTCGCCC 481678 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGA 112852 | ||| || || | || || || || |||| |||| || | || ||| | || || Sbjct 481677 GTTTCTCAGGGCATCCTGCAGTTCGACATGT-GGAATGTCACGCCCAGCGACCTCTGGGA 481619 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| | |||||||| | |||||| |||| ||| | || ||| ||| || | || Sbjct 481618 CTGGGCGTCGCTCAAGGAGCAGATCAAGCAGAACGGTGTGCGCAACTCGCTTCTGCTTGC 481559 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| ||| | || || |||| || || || |||||||| || || Sbjct 481558 GCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTTGAGCCGTA 481499 Query 112973 CACGACGAACATCTA 112987 ||| | ||||| || Sbjct 481498 CACTTCCAACATTTA 481484 >seq18 Length=564976 Score = 104 bits (114), Expect = 3e-17 Identities = 198/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCA 102106 ||||| |||| || || ||||| ||| || | ||| | || || | |||||| | Sbjct 230078 CTCATCGACACCTACATCAAGGAGCCTGCCCAGC-GCAGCTACCTGTTCAACGCCATCGA 230136 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTC 102166 || |||| || |||| || || || |||||| | |||||| || | | | | Sbjct 230137 CACCATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATT--TCCGACCGC 230194 Query 102167 GCGTT--CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | || ||||||| |||| || | || ||||| || ||||||||||||||||| Sbjct 230195 GAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCG 230254 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || | ||| | | |||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct 230255 GGCGCTTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTT 230314 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| || || ||||||||||| || ||| || ||||| Sbjct 230315 TCCAACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGC 230361 >seq14 Length=642483 Score = 89.7 bits (98), Expect = 6e-13 Identities = 276/416 (66%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| ||||| || || | ||||| | || |||||||| | || ||||| | Sbjct 233109 ACGATCAAAACGACCCGGACGCATCAGCGCCTTGTCCAGGATATCCGCACGGTTCGTGCC 233050 Query 15944 GGCGATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 ||| | || ||||| ||||| | | | || |||||||| || |||| | |||| Sbjct 233049 GGCCAGCACGACAAT--CTGTTCGGCCGTGTTGAAGCCATCCATTTCCGTCAGGATCTGG 232992 Query 16002 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCA--CCAG-CACTGCGTTGC 16055 || | || || || || || || ||| | | || | | || | | || | Sbjct 232991 TTGAGCGTGGACTCGCGCTCGTCGTTGCCGCCGCCCATGCGGTTCGAGTCGGTACGCGAC 232932 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 16115 || | |||||||||||| || || |||| |||||| || ||| | || || Sbjct 232931 CGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGCGCCGTG 232872 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTG 16173 |||| | || || ||||| || || |||||||| ||||||||||| ||||| | | Sbjct 232871 GCAAACAAGTCGCGCACACG--TGACGGACCCACACCGACAAACATCTCGACAAACTCGG 232814 Query 16174 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | || || || | ||| || || || || ||||| |||| ||| || || Sbjct 232813 AGCCGCTGACGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAGCAGC 232755 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| |||||||| || ||||| || | || || ||||| ||||||||||| Sbjct 232754 GTCTTTCCCGTACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGGCGCC 232699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742167221600