Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq19 230 3e-55 seq14 105 8e-18 seq5 82.4 9e-11 >seq19 Length=545716 Score = 230 bits (254), Expect = 3e-55 Identities = 1015/1590 (64%), Gaps = 39/1590 (2%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---T 109556 ||| | |||||| ||||| ||||| || |||||||||||| ||||| | | | | Sbjct 481231 GTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGT 481290 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || | ||| ||||| ||||||||||||| ||||||||| ||||||||| Sbjct 481291 ACGCT---GCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGATATCGTCGGGAATGCT 481347 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676 ||||| || ||||| || || | ||| | | |||||| | | |||||| Sbjct 481348 GGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCA 481407 Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736 ||||| | | ||||| | || |||||| || || || ||||| Sbjct 481408 CAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCAGC 481467 Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796 || || || |||| ||||| | ||||| || || || ||||| |||||||| || Sbjct 481468 CAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGTTGCCCAG 481527 Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856 || || | ||| || || ||||| || || | ||||| ||| || | ||| || Sbjct 481528 AATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGTT 481587 Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC 109916 | ||| | | |||| | | |||| || | | | || | | || Sbjct 481588 CTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCTGG-----GCGTGAC- 481641 Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTA 109976 || |||||| || || || | |||| || | | || ||||||| | | ||| Sbjct 481642 ATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTA 481701 Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036 | ||||| ||| ||| | || || ||| || || || || || || || || Sbjct 481702 GGTACCCTCCTCCTTGGCAATTTCCATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTC 481761 Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-A 110095 ||| || |||| || | ||||| ||| || | || || || | | || | | Sbjct 481762 AAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAAAAGGCATGCG-CAGCGCCA 481820 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || |||| || |||||||||||||| | ||||||||| || || |||||| || Sbjct 481821 GGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT---GC 481877 Query 110156 -GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || | | | || |||||||| |||| ||| |||| || || || || | Sbjct 481878 TGTTGTGG-GCCTCAGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGC 481936 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 ||| ||| |||| || || || || | | | ||| || ||| | | | | | Sbjct 481937 ACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCG 481996 Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| | || ||||| | || || || |||||||| | | ||| || | | Sbjct 481997 ACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAG 482056 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 || || | ||| || || |||| |||||| || ||| ||||| ||||||||| || Sbjct 482057 TACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTG 482116 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 ||| |||||| ||||| || |||||| | ||| | || || || ||||| | | Sbjct 482117 CTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCC 482176 Query 110452 TTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTC 110510 | |||||||| | ||| | | || | ||| || | ||| | | || || | Sbjct 482177 TCCAGAATGGCGTACCACAGCTTCTG-GGCCTTGATCGACGCGCGGCCACGGCCCTCTTG 482235 Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 ||||||||| ||||| | ||||||| |||| ||||| ||||| || || Sbjct 482236 CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCA 482295 Query 110571 CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTC 110630 || || ||| || | |||| ||| | | || ||| || | ||||||||| || || Sbjct 482296 CTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATC 482355 Query 110631 AGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAG 110690 |||||||||| |||| |||||| || ||| ||| |||| || | || ||||| Sbjct 482356 GGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 482415 Query 110691 GCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGA 110750 ||| || || | || || | | ||||| |||||| || || || || | || | || Sbjct 482416 GCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGC 482475 Query 110751 TCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 || | | || || |||||| || ||||| || ||| ||||| || | Sbjct 482476 ACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACG 482532 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864 ||||| ||||| || || | ||| ||| ||||| || ||| || | |||| Sbjct 482533 CAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGC 482592 Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACT 110923 ||||||| ||||| || | ||| |||||||| ||| ||| || |||| | | Sbjct 482593 ACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATCTTGGAGATCATAGCACAAGT 482652 Query 110924 CTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAG 110983 || |||| ||| | ||||| || || ||||| ||| |||| || ||| || ||||||| Sbjct 482653 CT-TGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAG 482711 Query 110984 AAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACA 111043 | |||| ||||| | ||||| ||||| ||||| || || || | || || ||| | Sbjct 482712 AGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGA--A 482769 Query 111044 GACCTTG--GGACATCTTGTTGTATGTGTC 111071 || |||| ||||| |||||| || || Sbjct 482770 GAACTTGCTAGACATGAGGTTGTACGTCTC 482799 >seq14 Length=642483 Score = 105 bits (116), Expect = 8e-18 Identities = 338/513 (66%), Gaps = 26/513 (5%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | |||||| |||||||| || || | || || | || || ||||| ||||||| Sbjct 233115 AATGTGACGATCAAAACGACCCGGACGCATCAGCGCCTTGTCCAGGATATCCGCACGGTT 233056 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCT-CATTGTCGAAACCGTCCATTTCTGTGAGAA 11614 || |||| | || ||||| | || | ||| ||| || |||||||| || || | Sbjct 233055 CGTGCCGGCCAGCACGACAAT-CTGTTCGGCCGTGTTGAAGCCATCCATTTCCGTCAGGA 232997 Query 11615 GCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCT 11674 |||||||| ||| || ||||| |||||| | | ||| ||| | || || Sbjct 232996 TCTGGTTGAGCGTGGACTCGCGCTCGTCGTTGCCG--CCGCCCA--TGCGGTTCGAGTCG 232941 Query 11675 -TAC-CGACAG--------CGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA 11724 ||| |||| | | |||||||| ||||| || | ||| ||||| || | Sbjct 232940 GTACGCGACCGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTA 232881 Query 11725 CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 || ||| | || | || || ||||| || || ||||| || |||||||| || Sbjct 232880 CGCGCCGTGGCAAACAAGTCGCGCACACGTGACGGACCCACACCGACAAACATCTCGACA 232821 Query 11785 AAGTTTGCG--GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842 || | | | || || | ||||| ||| || || ||||| || || |||| | Sbjct 232820 AACTCGGAGCCGCTGA-CGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGG 232763 Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902 | || || ||||| |||||||| || | ||| | |||| ||||| || |||||||||| Sbjct 232762 CCAGCAGCGTCTTTCCCGTACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGG 232703 Query 11903 CACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959 | || | |||| | || |||||||||||||| | ||||| |||| || | Sbjct 232702 CGCCCAGGCGCACAAACT---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCT 232646 Query 11960 CCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992 || ||||||| ||| || || | || |||| Sbjct 232645 CCACCTTGGCCTCGTCCATGCCGGCCACGTCGG 232613 >seq5 Length=2148850 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 169357 TTGGCACCATAACCGTTACGACCACCGACGATCCTCTTTTGAGAGTCATCATAATTGGTA 169416 |||||||| |||||||||||||||||||| || |||||| |||||| || |||| | Sbjct 1176726 TTGGCACCGTAACCGTTACGACCACCGACTGTCTTCTTTTCGTTGTCATCGTAGTTGGAA 1176667 Query 169417 CTCGTGAGAAGGTGACCGAA 169436 | |||||| || |||||||| Sbjct 1176666 CCCGTGAGCAGATGACCGAA 1176647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975779134000