Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq19 230 3e-55
seq14 105 8e-18
seq5 82.4 9e-11
>seq19
Length=545716
Score = 230 bits (254), Expect = 3e-55
Identities = 1015/1590 (64%), Gaps = 39/1590 (2%)
Strand=Plus/Plus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---T 109556
||| | |||||| ||||| ||||| || |||||||||||| ||||| | | | |
Sbjct 481231 GTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGT 481290
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| || | ||| ||||| ||||||||||||| ||||||||| |||||||||
Sbjct 481291 ACGCT---GCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGATATCGTCGGGAATGCT 481347
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCA 109676
||||| || ||||| || || | ||| | | |||||| | | ||||||
Sbjct 481348 GGGAATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCA 481407
Query 109677 GAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGC 109736
||||| | | ||||| | || |||||| || || || |||||
Sbjct 481408 CAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCAGC 481467
Query 109737 AAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAG 109796
|| || || |||| ||||| | ||||| || || || ||||| |||||||| ||
Sbjct 481468 CAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGTTGCCCAG 481527
Query 109797 GATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTT 109856
|| || | ||| || || ||||| || || | ||||| ||| || | ||| ||
Sbjct 481528 AATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGTT 481587
Query 109857 CGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC 109916
| ||| | | |||| | | |||| || | | | || | | ||
Sbjct 481588 CTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCTGG-----GCGTGAC- 481641
Query 109917 ATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTA 109976
|| |||||| || || || | |||| || | | || ||||||| | | |||
Sbjct 481642 ATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTA 481701
Query 109977 CGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTC 110036
| ||||| ||| ||| | || || ||| || || || || || || || ||
Sbjct 481702 GGTACCCTCCTCCTTGGCAATTTCCATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTC 481761
Query 110037 AAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-A 110095
||| || |||| || | ||||| ||| || | || || || | | || | |
Sbjct 481762 AAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAAAAGGCATGCG-CAGCGCCA 481820
Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155
|| |||| || |||||||||||||| | ||||||||| || || |||||| ||
Sbjct 481821 GGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT---GC 481877
Query 110156 -GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211
|| | | | || |||||||| |||| ||| |||| || || || || |
Sbjct 481878 TGTTGTGG-GCCTCAGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGC 481936
Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271
||| ||| |||| || || || || | | | ||| || ||| | | | | |
Sbjct 481937 ACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCG 481996
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
||| | || ||||| | || || || |||||||| | | ||| || | |
Sbjct 481997 ACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAG 482056
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
|| || | ||| || || |||| |||||| || ||| ||||| ||||||||| ||
Sbjct 482057 TACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTG 482116
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
||| |||||| ||||| || |||||| | ||| | || || || ||||| | |
Sbjct 482117 CTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCC 482176
Query 110452 TTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTC 110510
| |||||||| | ||| | | || | ||| || | ||| | | || || |
Sbjct 482177 TCCAGAATGGCGTACCACAGCTTCTG-GGCCTTGATCGACGCGCGGCCACGGCCCTCTTG 482235
Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570
||||||||| ||||| | ||||||| |||| ||||| ||||| || ||
Sbjct 482236 CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCA 482295
Query 110571 CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTC 110630
|| || ||| || | |||| ||| | | || ||| || | ||||||||| || ||
Sbjct 482296 CTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATC 482355
Query 110631 AGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAG 110690
|||||||||| |||| |||||| || ||| ||| |||| || | || |||||
Sbjct 482356 GGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTT 482415
Query 110691 GCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGA 110750
||| || || | || || | | ||||| |||||| || || || || | || | ||
Sbjct 482416 GCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGC 482475
Query 110751 TCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804
|| | | || || |||||| || ||||| || ||| ||||| || |
Sbjct 482476 ACC---AGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACG 482532
Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC 110864
||||| ||||| || || | ||| ||| ||||| || ||| || | ||||
Sbjct 482533 CAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGC 482592
Query 110865 ACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACT 110923
||||||| ||||| || | ||| |||||||| ||| ||| || |||| | |
Sbjct 482593 ACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATCTTGGAGATCATAGCACAAGT 482652
Query 110924 CTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAG 110983
|| |||| ||| | ||||| || || ||||| ||| |||| || ||| || |||||||
Sbjct 482653 CT-TGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAG 482711
Query 110984 AAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACA 111043
| |||| ||||| | ||||| ||||| ||||| || || || | || || ||| |
Sbjct 482712 AGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGA--A 482769
Query 111044 GACCTTG--GGACATCTTGTTGTATGTGTC 111071
|| |||| ||||| |||||| || ||
Sbjct 482770 GAACTTGCTAGACATGAGGTTGTACGTCTC 482799
>seq14
Length=642483
Score = 105 bits (116), Expect = 8e-18
Identities = 338/513 (66%), Gaps = 26/513 (5%)
Strand=Plus/Minus
Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555
||| | |||||| |||||||| || || | || || | || || ||||| |||||||
Sbjct 233115 AATGTGACGATCAAAACGACCCGGACGCATCAGCGCCTTGTCCAGGATATCCGCACGGTT 233056
Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCT-CATTGTCGAAACCGTCCATTTCTGTGAGAA 11614
|| |||| | || ||||| | || | ||| ||| || |||||||| || || |
Sbjct 233055 CGTGCCGGCCAGCACGACAAT-CTGTTCGGCCGTGTTGAAGCCATCCATTTCCGTCAGGA 232997
Query 11615 GCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCT 11674
|||||||| ||| || ||||| |||||| | | ||| ||| | || ||
Sbjct 232996 TCTGGTTGAGCGTGGACTCGCGCTCGTCGTTGCCG--CCGCCCA--TGCGGTTCGAGTCG 232941
Query 11675 -TAC-CGACAG--------CGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCA 11724
||| |||| | | |||||||| ||||| || | ||| ||||| || |
Sbjct 232940 GTACGCGACCGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTA 232881
Query 11725 CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784
|| ||| | || | || || ||||| || || ||||| || |||||||| ||
Sbjct 232880 CGCGCCGTGGCAAACAAGTCGCGCACACGTGACGGACCCACACCGACAAACATCTCGACA 232821
Query 11785 AAGTTTGCG--GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAG 11842
|| | | | || || | ||||| ||| || || ||||| || || |||| |
Sbjct 232820 AACTCGGAGCCGCTGA-CGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGG 232763
Query 11843 CGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGG 11902
| || || ||||| |||||||| || | ||| | |||| ||||| || ||||||||||
Sbjct 232762 CCAGCAGCGTCTTTCCCGTACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGG 232703
Query 11903 CACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTT 11959
| || | |||| | || |||||||||||||| | ||||| |||| || |
Sbjct 232702 CGCCCAGGCGCACAAACT---TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCT 232646
Query 11960 CCTCCTTGGCGGAGTCGATACCCTCAACATCGG 11992
|| ||||||| ||| || || | || ||||
Sbjct 232645 CCACCTTGGCCTCGTCCATGCCGGCCACGTCGG 232613
>seq5
Length=2148850
Score = 82.4 bits (90), Expect = 9e-11
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 169357 TTGGCACCATAACCGTTACGACCACCGACGATCCTCTTTTGAGAGTCATCATAATTGGTA 169416
|||||||| |||||||||||||||||||| || |||||| |||||| || |||| |
Sbjct 1176726 TTGGCACCGTAACCGTTACGACCACCGACTGTCTTCTTTTCGTTGTCATCGTAGTTGGAA 1176667
Query 169417 CTCGTGAGAAGGTGACCGAA 169436
| |||||| || ||||||||
Sbjct 1176666 CCCGTGAGCAGATGACCGAA 1176647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975779134000
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