Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19 230 3e-55 seq18 104 3e-17 >seq19 Length=545716 Score = 230 bits (254), Expect = 3e-55 Identities = 1146/1793 (64%), Gaps = 63/1793 (4%) Strand=Plus/Plus Query 105551 TCAAGACTGAACTGAATTGGGCGC-GCCTTTGCCTTAGATCGGAGATAGTACATCCCGGT 105609 |||| | |||||||||| |||||| || |||| | || || |||||||| || || Sbjct 481100 TCAACAGTGAACTGAAT-GGGCGCCGCAGCCGCCTGCGTACGCAGGTAGTACATGCCCGT 481158 Query 105610 CTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGAC 105668 |||||| || | ||||| || || | ||||| | | |||| |||||| || Sbjct 481159 CTTGAGACCCAGCTTCCA-GCCCGCAAAGTGCATGCTGGTAATCTTGCCCATCGTAGGGT 481217 Query 105669 TTTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGC 105726 | |||| || || | ||| |||| |||| || ||| |||||| | || || Sbjct 481218 CCTTCATGTGAATGTTGAGCGACTGGGACT--GGTCGATAAAGGCACCACGATCAGCAGC 481275 Query 105727 CATATCAATGACATCCTTCATCTTG---ATTTCCCACACTGTGCGGTAGAGATTCTTGAT 105783 ||| | | || || | || || |||||||| || ||| || |||||| Sbjct 481276 CATCTGCA---CAACCGTACGCTGCGAAATCTCCCACACAGTCTTGTACAGCGCCTTGAT 481332 Query 105784 ATCATCTGGGATATCTGAGA-TATTTTGAATTGAACC---CCCCGCCTTGACCATGAGAT 105839 ||| || || || ||| || | || || || || || | |||| ||| || | | Sbjct 481333 ATCGTCGGGAATG-CTGGGAATGTTCTGGATAGATCCGTTCTCCGCAATGA---TGCGGT 481388 Query 105840 CCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGA 105899 |||||| | | ||||| ||||| | | | |||||| | || ||||| Sbjct 481389 TCTTCATGTTGTCCGACCACAGACCCAGGTCCACCAGATCACGCAGCAGCCAAGGGTTGA 481448 Query 105900 CAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAA 105959 ||| | ||||| || || || | | | | || ||||| | ||||| || |||| Sbjct 481449 CAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAA 481508 Query 105960 AGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAA 106019 |||| || || || |||| || || | ||| ||| || ||||| || || | || || Sbjct 481509 AGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAA 481568 Query 106020 GACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA 106079 | ||| || | ||| || | |||||| | |||||||| ||||||| || | Sbjct 481569 GCGAGTTGCGCACACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGT 481628 Query 106080 -GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCC 106138 ||| || | || |||| |||| || || || || | || || || ||| |||||| Sbjct 481629 CGCTGGGCGTGACATTCC-ACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGAACCC 481687 Query 106139 TCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG-CCTCCAGGGATGC 106197 ||| | || |||| ||| | | | || | ||| || | | || ||||| || Sbjct 481688 TCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTC-CATCGAGGCCGTCAGGGCAGC 481746 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA--- 106254 ||| || |||||||||||||| ||| || | || || || | || ||||| Sbjct 481747 GTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAAAAGG 481806 Query 106255 --TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 106312 |||| |||| || || |||| || ||||| |||||||| | |||||| || Sbjct 481807 CATGCGCAGCGCCAGGAAGG-----CATCAGCCAGACCCTGAACACCAACACCAATGGGA 481861 Query 106313 CTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATG 106369 | ||| ||||| || || | || |||| ||||| || || ||||||| Sbjct 481862 CGGTGACGCATGTTGCTGTTGTGGGC---CTCAGGCACGGGGTAGTGGTTGACGTCAATG 481918 Query 106370 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 106429 | ||||| || || ||||| ||| |||| || || || || | | || | Sbjct 481919 ATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTAC 481978 Query 106430 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 106489 | | | | | |||| || || || || | || |||| ||||| || || Sbjct 481979 TCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGCACACGGCA 482038 Query 106490 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTC 106549 |||||| | |||||| | ||| || || |||| |||||| || || || Sbjct 482039 ACCTCATCAGGCGCACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTA 482098 Query 106550 CCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 106609 |||| ||||| ||||| ||||| |||||| |||||||| |||||| | || | Sbjct 482099 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTG 482158 Query 106610 CCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGC 106668 || ||||| ||||| | || ||||| || | ||||| | || | | || | | | | | Sbjct 482159 CCTGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGACG-C 482217 Query 106669 GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC 106728 | | | || ||||| |||||||||| ||| ||||| ||||||||||| || Sbjct 482218 GCGGCCACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCA 482277 Query 106729 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAAC 106788 || | || || || || || || || | || | ||| | | | || ||| || Sbjct 482278 ATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGAC 482337 Query 106789 CCGCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTACACCGAGCC 106846 ||||||||||| || || ||||||||||| | | |||| ||||| | ||| || Sbjct 482338 ACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAA--AGATCGCGGGCGCGAACC 482395 Query 106847 TCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 106906 || || | || ||||| || | ||||||||||| | | |||||||||||| ||| Sbjct 482396 TCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGC 482455 Query 106907 TCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGC 106962 || || || | || | | || | | | | ||| | || | || ||||| || Sbjct 482456 TCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGGGC 482514 Query 106963 TGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCG 107022 ||| ||| || || || ||||| ||||| ||||| | || ||| ||||| || Sbjct 482515 AGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGC 482574 Query 107023 AA--TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCAC 107080 || |||||| | |||| | | |||| | | || ||||| |||||| | Sbjct 482575 AATGTACGAG--CCAGTGGCACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATC 482632 Query 107081 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 107140 || ||||| ||||| | | ||||| | || || || | ||| ||||| ||||| Sbjct 482633 TTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTC 482692 Query 107141 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 107200 || | | ||||||||| ||||| ||| | || ||||| || ||||| || || Sbjct 482693 ATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTG 482752 Query 107201 GGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 || | ||||| ||| | | |||| ||||| || ||| ||||| | ||| | Sbjct 482753 GGCGAGGCGTGGGTGA--AGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGT 482810 Query 107259 CAATGTCT-TCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 ||| ||| || || ||||||| || |||||||||| ||||| ||||| Sbjct 482811 CAA-CTCTGTCACCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGG 482862 >seq18 Length=564976 Score = 104 bits (114), Expect = 3e-17 Identities = 524/821 (64%), Gaps = 33/821 (4%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| ||||| |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 230649 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATG 230590 Query 117046 AAGTCAAATGGATTCTTCG--CGTT---CCAAATGGGTGGCACCC-CAACTTGTTTGAGG 117099 |||||||| || ||| | | || | || | | || || |||| || Sbjct 230589 AAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGGGCAACC------AGC 230536 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 ||||| || | ||| |||||||||||| ||| || | |||||| || | || Sbjct 230535 AGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGG 230476 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || | |||| | |||||||| |||| || || | | ||| Sbjct 230475 GCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATGATC 230416 Query 117220 GCGTGGATA-GTTTC--GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | | | | | ||| | ||| | | | || || | ||||||| |||| Sbjct 230415 TCCTCAACAAGCTTCTTGCTAGGGCGGGTGTT---CAGGTGCGAGAAGAGCAGGCAGGCA 230359 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| |||||||| || || ||||| || || || || ||| || || ||| Sbjct 230358 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGC 230299 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 || ||||| ||||| || ||| |||| | | ||| | || ||||||||||||||| Sbjct 230298 ATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCC 230239 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || || ||||| || | || |||| ||| |||| ||| | || | || ||| Sbjct 230238 TCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGG-TCGACTCGCGGTCGGAAATCCA 230180 Query 117456 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAA 117511 || | ||||| | ||||| ||| || || | || | |||||| | || Sbjct 230179 CTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAG 230120 Query 117512 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 || |||| || ||| ||||| ||||| |||| || | || || || | Sbjct 230119 GTAGCTGC-GCTGGGCAG---GCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCT 230064 Query 117572 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 | || | | | ||| ||| | || | ||||||| |||| || ||| ||| Sbjct 230063 CCGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 117631 TGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 117690 || || ||| ||| ||| | | ||||| ||||| || || || |||| Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 117691 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAG 117747 ||||| ||||||| || | ||||| | |||||| | | |||| || | |||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 117748 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 |||| |||||| ||||||| ||||| || || || ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCA 229844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980578757200