Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq16 89.7 3e-13
>seq6
Length=1902109
Score = 100 bits (110), Expect = 2e-16
Identities = 142/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| | || |||| || ||||| || ||||| ||
Sbjct 700932 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAA 700873
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| |||||| ||||| ||
Sbjct 700872 ATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT 700815
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| || || | ||| | ||| || || | ||| || || ||||| || ||||||||
Sbjct 700814 --TGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTT 700757
Query 34967 CACAAAGATCTGCATA 34982
|||||||||||||||
Sbjct 700756 GACAAAGATCTGCATA 700741
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || ||||| | || |||| |||||||| || || |||||
Sbjct 701160 TCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAG 701101
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||||| |||||
Sbjct 701100 ATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTG 701041
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | || || || | || ||||| || || || || |||||||||
Sbjct 701040 TCAATCGTGTCCGACGATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACA 700981
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 700980 AAGATCTGCATA 700969
>seq16
Length=638914
Score = 89.7 bits (98), Expect = 3e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| || ||| | || |||| |||||||| || || || || ||
Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || |||||||| | || | ||||||||||| ||||| |||||| |
Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | ||| ||||| || ||||| || ||||| || ||
Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 520752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633481305840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |