Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq16 89.7 3e-13 >seq6 Length=1902109 Score = 100 bits (110), Expect = 2e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| || ||||| || ||||| || Sbjct 700932 TCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAA 700873 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| ||||| || Sbjct 700872 ATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT 700815 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | ||| || || | ||| || || ||||| || |||||||| Sbjct 700814 --TGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTT 700757 Query 34967 CACAAAGATCTGCATA 34982 ||||||||||||||| Sbjct 700756 GACAAAGATCTGCATA 700741 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||||||| || || ||||| Sbjct 701160 TCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAG 701101 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||||| ||||| Sbjct 701100 ATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTG 701041 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || || || | || ||||| || || || || ||||||||| Sbjct 701040 TCAATCGTGTCCGACGATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACA 700981 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 700980 AAGATCTGCATA 700969 >seq16 Length=638914 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| | || |||| |||||||| || || || || || Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| || || ||| || || | ||| ||||| || ||||| || ||||| || || Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 520752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633481305840