Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 >seq1 Length=4116995 Score = 98.7 bits (108), Expect = 8e-16 Identities = 199/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 |||||| ||||| | ||||| || ||||| || || ||||| || ||| Sbjct 2530529 CACGTAGAACTGGGCAAACATG---TGACACGGCGGCAGCGCCATCTTCTTCAGGTCCGC 2530585 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30104 || ||||| || | || |||||||| || || | ||| ||||| | | || ||| Sbjct 2530586 CGGATTCCACGCACTCATAATGATGCGTCTATCGTAGGGGGTGTTCTTCAGCTTGTGCAC 2530645 Query 30105 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30164 | | | |||||| || || ||| |||| |||||||| | | || ||||| Sbjct 2530646 CACCTCTGCCAGCTGGTCGACACCCTGGCCCGTGTAGTCTGTCTGCGCATCGACATACTC 2530705 Query 30165 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30224 ||| || ||||||| |||||||||||||||||| || |||| ||| ||||| ||| ||| Sbjct 2530706 TGCGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAGTCGCCCTCGGCCCGGTG 2530765 Query 30225 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30278 | | |||| ||| || | | | || |||||| ||||||| ||||| Sbjct 2530766 GCCCAGGCCCACGCTGTTCAGGTACGCGCGCGACCCGTTGCCGTCCCATATCTT 2530819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617450599190