Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 >seq6 Length=1902109 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 48571 TGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGG 48630 |||| | || || || ||||| || || ||| | || | || |||| |||||| || | Sbjct 107623 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 107564 Query 48631 CAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTA 48690 | || ||||| ||||| ||||||| ||||| |||||||||||| || || || | Sbjct 107563 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGA 107504 Query 48691 CAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTT 48750 || | | || || || | ||| ||||| | |||||||| || ||||||| || | Sbjct 107503 CATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCT 107444 Query 48751 TTACAAAAATCTGCATCGTG 48770 | || |||||||||||| || Sbjct 107443 TGACGAAAATCTGCATCTTG 107424 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || || ||| || || || |||||||| || || | || Sbjct 701187 AGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGG 701128 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| ||||| ||||| ||||| || |||| |||| |||||| Sbjct 701127 CCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCC 701068 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || |||| || ||||| | ||| Sbjct 701067 TTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTG 701008 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| || || ||||| |||||||| Sbjct 701007 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || ||| | ||| | || || Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| || |||| |||| |||||||||||| Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||| | || || || ||| Sbjct 700830 ATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTT 700771 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || ||||| |||||||| Sbjct 700770 CCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937460719690