Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19 396 5e-105 seq18 205 2e-47 >seq19 Length=545716 Score = 396 bits (438), Expect = 5e-105 Identities = 924/1379 (67%), Gaps = 31/1379 (2%) Strand=Plus/Plus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| || || | ||||| | | |||||||| ||| |||||||| Sbjct 481441 AGGGTTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTA 481500 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||| | || ||||||||| ||||||||||| | |||||||| || ||||| || || Sbjct 481501 CGGCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGC 481560 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 | ||| || ||| | ||| |||| || ||| | | ||| |||||||| Sbjct 481561 AAGCAGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTC 481620 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 ||| ||||| | | | || ||||||||||| ||||||| |||||| | Sbjct 481621 CCAG---------AGGTCGCTGGGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTG 481671 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 ||||| |||| || | ||||||| || | ||||||||| | || || Sbjct 481672 AGAAACGGGCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCAATTTCCATCGA 481731 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 ||| ||||||||||| ||||||||||||||| |||| |||||||||| ||||| Sbjct 481732 GGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTC 481791 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTT-GGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | ||| || ||||| || ||| |||| |||||||||| ||||| || || | Sbjct 481792 GGCAGACTCAAAAGGCATGCGCA-GCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAA 481850 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGC 213384 || ||||| | ||| | || ||| ||| | ||| || |||||| |||| Sbjct 481851 CACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGCACGGGGTAGTGGTTGA 481910 Query 213385 AGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGT 213444 ||| ||||| ||| |||||||| | || |||||||| | | ||| | || | Sbjct 481911 CGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGA 481970 Query 213445 GATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGC 213504 | | || ||| || | |||||| ||||| || | |||||||||| Sbjct 481971 AGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGAGCCAGCGAAGCCAGGTTGC 482030 Query 213505 AAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATC 213564 | ||||| ||||| | || | |||||| || ||||| |||||||||||| || | Sbjct 482031 ACACGGCAACCTCATCAGGCGCACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGC 482090 Query 213565 GGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATG 213623 ||||||| |||||||||| ||||| ||| ||| | |||| |||||||| |||||| Sbjct 482091 GGATGGTACCCAGGTTCTTCTGGTTGCTCTT-GCGGTTGCAGTGGTCCTTGTACAGCATG 482149 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 | ||| || ||||| ||||| | |||| || | ||| || | | ||||||| Sbjct 482150 AACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAGCTTCTGGGCCTTG 482209 Query 213684 ACC-ACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATT 213741 | | || ||| || ||| | | |||||||| |||||| || | | || | Sbjct 482210 ATCGACGCGCG-----GCCACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACT 482264 Query 213742 CGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCC 213800 | | ||| || | | | |||| || || || ||| ||||| ||| ||||||| Sbjct 482265 CCTCGCCGTAGCAATCAG-CCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCA 482323 Query 213801 CCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC 213859 ||| | |||| ||| | || |||||| || || || | ||||||||| ||| || || Sbjct 482324 GCGTTCTTCTC-GACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATC 482382 Query 213860 CCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTC 213919 | || | ||| ||| || ||| |||||||| || || || ||||| | || Sbjct 482383 GCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATC 482442 Query 213920 CGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTC 213976 ||||||||||||||||| ||| ||||||||||| || | || | ||||| |||||||| Sbjct 482443 CGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTC 482502 Query 213977 CACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCC 214036 || | ||| ||||||| | ||||| | ||| | | |||||||| || Sbjct 482503 GACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACC 482562 Query 214037 GTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTATG 214094 ||| || || || || |||||||| | ||| | | | || ||| |||| || || Sbjct 482563 GTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGA--CCGATA 482620 Query 214095 CCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATG 214154 ||||| || |||||||||||| || || | | | ||| || ||||| | || Sbjct 482621 CCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATC 482680 Query 214155 CTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAG 214214 ||| || | | || | || |||||| || ||||| | | || || || | | Sbjct 482681 GAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCG 482740 Query 214215 TTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTC 214273 |||||||| ||||| ||| ||| | | |||||| |||| | ||| |||| ||||| Sbjct 482741 TTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTC 482799 >seq18 Length=564976 Score = 205 bits (226), Expect = 2e-47 Identities = 493/739 (67%), Gaps = 23/739 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| |||||||||||| Sbjct 230653 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTC 230594 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGT-GTCAGGCCCATCTGTTCC 47953 ||||||| |||||||| | | | || ||| ||| | || | || | | Sbjct 230593 CATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGGGCAAC-----C 230539 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || ||||| |||| ||||| | ||||||| | ||||||||| | Sbjct 230538 AGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGC 230479 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 |||| |||| ||||| || || ||||||||||| || ||||| || | Sbjct 230478 AGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATG 230419 Query 48074 ATCTGCTTAACGCGGGACTCTG--AGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 |||| || ||| | || || |||| || | ||||||| | |||||| || Sbjct 230418 ATCTCCTCAACAAGCTTCT-TGCTAGGGCGGGT-GTTCAGGTGCGAGA---AGAGCAGGC 230364 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| |||||| || ||||| || || ||| ||||||| ||| |||| Sbjct 230363 AGGCAAAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGAC 230304 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | || | || ||||||||||| | ||||||| ||| |||||||||| Sbjct 230303 CGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGA 230244 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | || | || | | | ||| || | Sbjct 230243 TACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTCGGAAA 230184 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || |||||||| ||||| ||||| || || || || ||||| || Sbjct 230183 TCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGA 230124 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 | || | ||| || | | ||| | ||||| |||||||| | |||| Sbjct 230123 ACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGC---GAGTACG 230067 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 230066 TCTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGA 230007 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || ||||| | ||| | || ||||| ||||| || || || ||||||| Sbjct 230006 TCTGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAG 229947 Query 48549 CAAAGAAGGCAAGGACATG 48567 | |||||||| ||||| || Sbjct 229946 CGAAGAAGGCCAGGACGTG 229928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532450675200