Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq19 322 9e-83 seq18 212 1e-49 >seq19 Length=545716 Score = 322 bits (356), Expect = 9e-83 Identities = 969/1485 (65%), Gaps = 71/1485 (5%) Strand=Plus/Plus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG---GCCTC 221472 |||||||||||||||||||||||| ||||||||| ||||||| |||| ||||| Sbjct 481735 CGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAG---CTTGCGAGCCTC 481791 Query 221473 GGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || ||| || ||||| |||||| | | ||| | || ||||| ||||| || || | Sbjct 481792 GGCAGACTCAAAAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAAC 481851 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590 ||| ||||| | ||| | | ||||| | | || || || |||||||| || |||| Sbjct 481852 ACCAATGGGACGGTGACGCATGTTGCTGTTGTGG--GCCTCAGGCACGGGGTAGTGGTTG 481909 Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 ||||| || | ||| ||||| | | || || |||||| |||||||||| Sbjct 481910 ACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGG 481969 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || | ||||| || || | || ||||| | || || | Sbjct 481970 ------AAGTCGTACTCGTTCTTGTTGTAG------TCGACAAACGACGGCAGAGCCAGC 482017 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 |||||||| |||||||| ||||| || |||| || ||||| || || Sbjct 482018 GAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAGTACTCAATAATCTCAGTGCAC 482077 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 |||||| || |||||| ||||||| || || || |||||| ||| ||| | || Sbjct 482078 AGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTC 482136 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||| ||||| || || ||| ||||| ||| ||| ||||||| || ||| || Sbjct 482137 CTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATGGCGTACCACAG 482196 Query 221890 -TTCTCTG-------------GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCA 221935 |||| | ||| ||| | ||||||| |||| |||||| Sbjct 482197 CTTCTGGGCCTTGATCGACGCGCGGCCACGGCCCTCTTG--------CTCGTACTTTTCG 482248 Query 221936 TACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG 221995 ||| || || | |||||| || ||||| || ||||||| || ||| | Sbjct 482249 TAC-------AGGGCCT--CAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCG 482299 Query 221996 GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGG 222055 ||| |||||||| |||||| ||| | | ||| | || ||||||||| || || Sbjct 482300 TTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGA 482359 Query 222056 ATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTC 222115 |||||||||||| | || ||||| | || || ||||||| ||||| ||| || | | Sbjct 482360 ATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGC 482419 Query 222116 AGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCG 222175 || || | |||||||| | || ||||||||||||||||| || | ||| | || || Sbjct 482420 AGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCA 482479 Query 222176 GGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGT 222234 || ||||||||||||||||| || | | | ||| | |||||| | || || | Sbjct 482480 GGGCGCTTGTTGCCACCCTGGTCGA-CGTAGCGGGCAGTGTTGTTGAACACACGCAGCAT 482538 Query 222235 CGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAG 222294 || | | |||||||| |||||| ||||| |||||||| || ||| | | Sbjct 482539 GGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAAT 482598 Query 222295 GTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCT 222350 | || ||||| ||||||||||| || || |||||||| || || ||| Sbjct 482599 G----CGGTGGACATTGAGACCGATACCACCAGCCATCTTGGAGATCATAGCACAAGTCT 482654 Query 222351 TGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACG 222410 ||||||| || |||||||| || ||||| ||||| | || | ||| || ||||| | Sbjct 482655 TGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGG 482714 Query 222411 ACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGC 222470 ||| ||||| | || | || ||||| || || ||||| |||||| || ||| | Sbjct 482715 ACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACT 482774 Query 222471 CCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCA 222530 |||||||| || | ||||||||| | || | | | | |||| || ||| | Sbjct 482775 TGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCACCCCAAATGCCGA 482834 Query 222531 TGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAG 222588 || | ||| ||||| |||||| | ||| ||| || | ||||| || Sbjct 482835 CAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCT--TCAG 482892 Query 222589 CAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 ||||||||| ||||| |||||||| |||||||| | | || ||||| | | | | Sbjct 482893 CAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCATA 482952 Query 222649 AACCACGGCGGCGTCCAGCTCCGACTTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGA 222708 || | ||| | ||||||||| |||||| | | | |||| || || || Sbjct 482953 CACAATGGCCGAGTCCAGCTCTTCCTTGTGGCGCATGATGCACTCATAAGTCTCCTTGGA 483012 Query 222709 CACGAGGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGC 222768 | | ||| | | || | || | ||||| |||| ||||||||| | | ||| | | Sbjct 483013 GATCATGGGCGAGGCCTTGCGGTTGGCAGGGTTGACGTAGTGGTACAGATCCGACACGAC 483072 Query 222769 ATCAGAGAAC-GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCA 222827 || || | || | ||||||||||| || || |||||||| || || | |||| Sbjct 483073 CGACGACCACTGCTTCTTG-GTCTGCTTGTGAAGGTTGGACACGGCAATGCGGGCAGCCA 483131 Query 222828 AGATACCATAGTCAGGGTGCACGGTGGTCATGCTGGCTAGGGTCT 222872 ||| | ||||| ||||| | ||||||| ||| ||||| Sbjct 483132 GAATAGCGTAGTCGGGGTGGGTGACGGTCATGTAGGCAGCGGTCT 483176 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||||| | | |||||| | ||| |||||| |||| Sbjct 481444 GTTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGG 481503 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||||||||| ||||| | ||||||||| || ||||| || || | Sbjct 481504 CTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAG 481563 Query 221236 CAGCAGACTGTTGCGCA 221252 ||| || |||||||| Sbjct 481564 CAGAAGCGAGTTGCGCA 481580 >seq18 Length=564976 Score = 212 bits (234), Expect = 1e-49 Identities = 569/863 (66%), Gaps = 36/863 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| ||||| |||||||||||| Sbjct 229808 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATCTG 229867 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCT-ATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | || ||| ||||| || | || || | Sbjct 229868 TCCAAGGATCTTCACGACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTCATCTCG 229927 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| |||| ||||| || || || || || || || |||||||| || |||| | Sbjct 229928 CACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGTCGAGCGT 229987 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 ||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 229988 TTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATG 230047 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| ||| | ||| || || || ||||| | || Sbjct 230048 GAGAACATCCACTCGGAGACGTACTC---GCTGCTCATCGACACCTACATCAAGGAGCCT 230104 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 ||| || | || | ||||| |||||||| ||| || |||| | ||||| Sbjct 230105 GCCCAGCGCAGCTAC-CTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAAGGC 230163 Query 25830 GCGGTGGGCCATGAAGTGGAT---CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||||| | |||||||| | || || || | || |||| | |||| ||||| Sbjct 230164 CGACTGGGCTCTCAAGTGGATTTCCGACCGCGAGT---CGACCTTTGCCCAGCGTCTGGT 230220 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| || || ||||| ||||| ||| || | || || |||| |||||||| Sbjct 230221 GGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCT 230280 Query 25947 ---CAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 ||||| | || | |||||||| ||| ||||||||||||||| || | | Sbjct 230281 GCGCAAGC----GTGGTCTGATGCCCGGTCTGACCTTTTCCAACGAGCTGATTTCGCGTG 230336 Query 26003 ACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAAC 26062 |||||||||| |||| || |||||||||||||||| | || ||| || ||| | Sbjct 230337 ACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCTTCTCG---CACCTG-AACACCCGC 230392 Query 26063 CTTCTCAAGAGACCGTCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | | ||||| | | | | || ||||||| || || || | || ||||||||||| Sbjct 230393 CCTAGCAAGA-AGCTTGTTGAGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTT 230451 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180 | | ||||||||| | ||||||| || || Sbjct 230452 CCTGACCGAGGCTCTGCCTTGCGCCCTGCTTGGCATGAACGCCGACCTCATGAAGCAGTA 230511 Query 26181 CATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| ||| ||||||| ||||||| |||| || || || | ||||| | Sbjct 230512 CATTGAGTTTGTCGCCGACCGTCTGCTGGTTGCC--CTTGGCAACGAGAAGGTCTACCGC 230569 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | | ||||| || ||||| ||||| ||||| ||| ||| || |||||||||||||| Sbjct 230570 TCCACGAACCCCTTTGACTTCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTC 230629 Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321 || ||| | || || ||||| || Sbjct 230630 GAGAAGCGTGTTGGTGACTACCA 230652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844451683200