Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq19 149 2e-30
seq5 127 6e-24
seq10 123 7e-23
seq18 104 7e-17
>seq19
Length=545716
Score = 149 bits (164), Expect = 2e-30
Identities = 562/877 (64%), Gaps = 11/877 (1%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || | ||||||| ||||||||| || || |||||| || | |||||||||||
Sbjct 482056 GTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 482115
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| | ||| || |||||||| || ||| | ||| | |||||||| |||| ||
Sbjct 482116 GCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGC 482175
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|||||||| ||| || | |||| || || | | | | ||| ||
Sbjct 482176 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGACGCGCGGCCACGGCCCTCTTG 482235
Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869
||| || || ||||| | | ||||| ||||| |||||| ||| ||||||||
Sbjct 482236 CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCA 482295
Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926
|| | |||||| | ||| | ||| | || || ||| |||||| ||| || |
Sbjct 482296 CTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGA---CACGCTTCATGAAGAG 482352
Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986
||| ||| | || |||||| || | || |||||| | |||||| ||
Sbjct 482353 ATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTT 482412
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || || || | ||| || | ||| | || |||||||| || || |||||
Sbjct 482413 CTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAA 482472
Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
|||| | |||| |||||||| || || || || ||||| || ||||| ||||
Sbjct 482473 GGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACG 482532
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163
||||| ||||| ||||| ||||| || || || || ||| ||| | ||| |||| |
Sbjct 482533 CAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGC 482592
Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222
|||| || | || || || |||||||| | |||| || || || ||| ||
Sbjct 482593 ACGAATGCGGTGGACATTGAGACCGATACCACCAG-CCATCTTGGAGATCATAGCACAAG 482651
Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282
||| | ||||| | |||| || || || || || || | ||| | || |||| |
Sbjct 482652 TCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAG 482711
Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342
| | |||| | || || || |||||||| || || || | || || | ||
Sbjct 482712 AGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGA 482771
Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402
|||| ||||||| | ||| ||||| ||| |||| | || ||| |
Sbjct 482772 ACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCACCCCAAATGC 482831
Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462
|| || || | ||| ||| ||||| |||||||| |||||| || || | ||
Sbjct 482832 CGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTCA 482891
Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| ||||| | || ||||| || || || || || ||
Sbjct 482892 GCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTA 482928
>seq5
Length=2148850
Score = 127 bits (140), Expect = 6e-24
Identities = 194/274 (71%), Gaps = 2/274 (1%)
Strand=Plus/Minus
Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651
|||||||||||| ||||| || || || || ||||| || ||||| ||||| ||||
Sbjct 304860 ACGACGCTGAATGTAACCGGTCTCAGCAGTCTTGACAGCAGTGTCAATGAGACCCTCACG 304801
Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710
|||| |||| || |||||||| | ||| | || || || || | || | ||| |||
Sbjct 304800 ACCAGCCATGGCGTGGAAGAAGAACTC-GCTGGGAGTCAGGCCACGAAGGTACGAGTTCT 304742
Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770
| ||||| ||||| ||||| || || | ||| |||||| ||||| ||||| || | ||
Sbjct 304741 CGACGAAGCCACGGGCCTCAGGAGAGTAATCGTCCTTGGTGAAGTGAGGCAGCGTGCGGT 304682
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCA 302830
|| | ||| | || |||||||| || || || | ||||| || | || | |||
Sbjct 304681 ACTTGAAACCGAACGGAATACGCTTACCCTCCACAATTTGCTGACCGACAAGCGCAGTCA 304622
Query 302831 TCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864
|||| ||||| || | | | |||||||| ||
Sbjct 304621 TCTGAGAAATGTTGATAGTAGAACCCTTGGAACC 304588
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || ||||| |||| ||||| |||||| | ||||||||||
Sbjct 305663 AGAATTTCCTTGAGACGAGGCACACCCAGGGTAACGTT---CTTGGAAGAAACACCAGCA 305607
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|||||||| || || || || | ||||||| ||||||||||| ||| || ||||
Sbjct 305606 AAGTGGAAGGTGTTGAGCGTCATCTGAGTAGCGGGCTCACCAATCGATTGCGCAGCAAGA 305547
Query 301933 ATACCAACCATTTCTCCTGG 301952
| ||| ||||| || || ||
Sbjct 305546 ACACCGACCATCTCACCAGG 305527
>seq10
Length=914541
Score = 123 bits (136), Expect = 7e-23
Identities = 182/257 (71%), Gaps = 8/257 (3%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| ||||| || | | || | |||||| | | |||||||||| | ||| | || ||
Sbjct 656328 ATCAGACCGCAAATCTCGCAAATATGGACACGGAAAGCATCAGACACCTCAAAGAGACGC 656269
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| || |||||||| | ||||||||||||||| |||||||| ||||||
Sbjct 656268 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAA 656209
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586
|| ||||||||||| ||||| | ||||||| | ||||| || || | | | | |||
Sbjct 656208 CGCAGACCACCATCACGAGCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTACGGGA 656149
Query 251587 CC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642
|| | ||||| || ||| || | |||||||| |||||||||||| |
Sbjct 656148 CCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATATGACGAAGACGCTGGTAGTA 656093
Query 251643 TGCGGGACCGATGAAGA 251659
| |||||||| |||||
Sbjct 656092 CGTGGGACCGAAGAAGA 656076
Score = 98.7 bits (108), Expect = 3e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 656250 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAGACCACCATCACGA 656191
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391
| | ||||| ||| | || || || | || | || | ||||| |||||||| |
Sbjct 656190 GCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTAC-GGGACCACGAGCACGAGCGTG 656132
Query 233392 AATTTTATCTTTAACCATATG 233412
||| || || | ||||||||
Sbjct 656131 AATCTTGTCGTCCACCATATG 656111
>seq18
Length=564976
Score = 104 bits (114), Expect = 7e-17
Identities = 239/355 (67%), Gaps = 4/355 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| ||||| ||| || || | ||||| |||||| || ||||| || || |
Sbjct 230010 CCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGT 230069
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423
| || || || || || |||||||| || | | |||| ||| | | || ||||||
Sbjct 230070 ACTCGCTGCTCATCGACACCTACATCAAGGAGCCTGCCCAGC-GCAGCTACCTGTTCAAC 230128
Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483
||||| | ||||||| ||| || | ||||||||| | || |||||
Sbjct 230129 GCCATCGACACCATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCC 230188
Query 133484 GACAAGCGTG-CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||| ||| | ||| ||||| ||||| || || ||||| | || ||||| || ||
Sbjct 230189 GAC-CGCGAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTT 230247
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||| || || ||| ||| ||||| ||||| ||||||||| | | || || ||
Sbjct 230248 CTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCT 230307
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| ||||| || ||||| | ||||||| || |||||||| ||||||
Sbjct 230308 GACCTTTTCCAACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCC 230362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817034270110
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