Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq19 149 2e-30 seq5 127 6e-24 seq10 123 7e-23 seq18 104 7e-17 >seq19 Length=545716 Score = 149 bits (164), Expect = 2e-30 Identities = 562/877 (64%), Gaps = 11/877 (1%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||||||| ||||||||| || || |||||| || | ||||||||||| Sbjct 482056 GTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTT 482115 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || |||||||| || ||| | ||| | |||||||| |||| || Sbjct 482116 GCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGC 482175 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 |||||||| ||| || | |||| || || | | | | ||| || Sbjct 482176 CTCCAGAATGGCGTACCACAGCTTCTGGGCCTTGATCGACGCGCGGCCACGGCCCTCTTG 482235 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||| || || ||||| | | ||||| ||||| |||||| ||| |||||||| Sbjct 482236 CTCGTACTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCA 482295 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | ||| | ||| | || || ||| |||||| ||| || | Sbjct 482296 CTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGA---CACGCTTCATGAAGAG 482352 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | || |||||| || | || |||||| | |||||| || Sbjct 482353 ATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTT 482412 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || | ||| || | ||| | || |||||||| || || ||||| Sbjct 482413 CTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAA 482472 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| | |||| |||||||| || || || || ||||| || ||||| |||| Sbjct 482473 GGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACG 482532 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 ||||| ||||| ||||| ||||| || || || || ||| ||| | ||| |||| | Sbjct 482533 CAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGC 482592 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 |||| || | || || || |||||||| | |||| || || || ||| || Sbjct 482593 ACGAATGCGGTGGACATTGAGACCGATACCACCAG-CCATCTTGGAGATCATAGCACAAG 482651 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | ||||| | |||| || || || || || || | ||| | || |||| | Sbjct 482652 TCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAG 482711 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | |||| | || || || |||||||| || || || | || || | || Sbjct 482712 AGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGA 482771 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 |||| ||||||| | ||| ||||| ||| |||| | || ||| | Sbjct 482772 ACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCTGTCACCCCAAATGC 482831 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCA 156462 || || || | ||| ||| ||||| |||||||| |||||| || || | || Sbjct 482832 CGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTCA 482891 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||||| | || ||||| || || || || || || Sbjct 482892 GCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTA 482928 >seq5 Length=2148850 Score = 127 bits (140), Expect = 6e-24 Identities = 194/274 (71%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 302592 ACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACG 302651 |||||||||||| ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 304860 ACGACGCTGAATGTAACCGGTCTCAGCAGTCTTGACAGCAGTGTCAATGAGACCCTCACG 304801 Query 302652 ACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCT 302710 |||| |||| || |||||||| | ||| | || || || || | || | ||| ||| Sbjct 304800 ACCAGCCATGGCGTGGAAGAAGAACTC-GCTGGGAGTCAGGCCACGAAGGTACGAGTTCT 304742 Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 | ||||| ||||| ||||| || || | ||| |||||| ||||| ||||| || | || Sbjct 304741 CGACGAAGCCACGGGCCTCAGGAGAGTAATCGTCCTTGGTGAAGTGAGGCAGCGTGCGGT 304682 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCA 302830 || | ||| | || |||||||| || || || | ||||| || | || | ||| Sbjct 304681 ACTTGAAACCGAACGGAATACGCTTACCCTCCACAATTTGCTGACCGACAAGCGCAGTCA 304622 Query 302831 TCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||| ||||| || | | | |||||||| || Sbjct 304621 TCTGAGAAATGTTGATAGTAGAACCCTTGGAACC 304588 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| |||| ||||| |||||| | |||||||||| Sbjct 305663 AGAATTTCCTTGAGACGAGGCACACCCAGGGTAACGTT---CTTGGAAGAAACACCAGCA 305607 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||||||| || || || || | ||||||| ||||||||||| ||| || |||| Sbjct 305606 AAGTGGAAGGTGTTGAGCGTCATCTGAGTAGCGGGCTCACCAATCGATTGCGCAGCAAGA 305547 Query 301933 ATACCAACCATTTCTCCTGG 301952 | ||| ||||| || || || Sbjct 305546 ACACCGACCATCTCACCAGG 305527 >seq10 Length=914541 Score = 123 bits (136), Expect = 7e-23 Identities = 182/257 (71%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || ||||| || | | || | |||||| | | |||||||||| | ||| | || || Sbjct 656328 ATCAGACCGCAAATCTCGCAAATATGGACACGGAAAGCATCAGACACCTCAAAGAGACGC 656269 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| |||||||| |||||| Sbjct 656268 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAA 656209 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| ||||| | ||||||| | ||||| || || | | | | ||| Sbjct 656208 CGCAGACCACCATCACGAGCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTACGGGA 656149 Query 251587 CC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || | ||||| || ||| || | |||||||| |||||||||||| | Sbjct 656148 CCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATATGACGAAGACGCTGGTAGTA 656093 Query 251643 TGCGGGACCGATGAAGA 251659 | |||||||| ||||| Sbjct 656092 CGTGGGACCGAAGAAGA 656076 Score = 98.7 bits (108), Expect = 3e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 656250 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAGACCACCATCACGA 656191 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||||| ||| | || || || | || | || | ||||| |||||||| | Sbjct 656190 GCACGACCCTCGACGGGCTGGCGCGTCATAATCTGTAC-GGGACCACGAGCACGAGCGTG 656132 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | |||||||| Sbjct 656131 AATCTTGTCGTCCACCATATG 656111 >seq18 Length=564976 Score = 104 bits (114), Expect = 7e-17 Identities = 239/355 (67%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| ||||| ||| || || | ||||| |||||| || ||||| || || | Sbjct 230010 CCGAGGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAGACGT 230069 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || || |||||||| || | | |||| ||| | | || |||||| Sbjct 230070 ACTCGCTGCTCATCGACACCTACATCAAGGAGCCTGCCCAGC-GCAGCTACCTGTTCAAC 230128 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | ||||||| ||| || | ||||||||| | || ||||| Sbjct 230129 GCCATCGACACCATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATTTCC 230188 Query 133484 GACAAGCGTG-CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||| ||| | ||| ||||| ||||| || || ||||| | || ||||| || || Sbjct 230189 GAC-CGCGAGTCGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTT 230247 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||| || || ||| ||| ||||| ||||| ||||||||| | | || || || Sbjct 230248 CTTCTCGGGCGCTTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCT 230307 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || ||||| | ||||||| || |||||||| |||||| Sbjct 230308 GACCTTTTCCAACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCC 230362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817034270110