Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 228 1e-53 seq19 161 1e-33 seq18 141 1e-27 seq1 136 5e-26 seq14 116 5e-20 seq17 95.1 1e-13 seq2 95.1 1e-13 seq26 89.7 6e-12 >seq6 Length=1902109 Score = 228 bits (252), Expect = 1e-53 Identities = 288/396 (73%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||||||||| || ||||||||||||||||||| | |||||| | Sbjct 503797 CAGCTTCGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATCGACAACCCGCCGCCTGG 503738 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 |||| | || |||| |||||||||||||| ||| || || || || || |||||| | Sbjct 503737 CATGTCTCTTACCGAAGCCGACATCCAGCCGCAGCTGACGCGCCGTCGCCCCGGCCAGAG 503678 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 | | | |||||||||||||||| || || |||| ||| | || ||| || Sbjct 503677 CTCCATCACCACGCCGCGCAACGAAAAGGACCGTGTCACCATTCTCTCCGGCTGCGAATT 503618 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| ||| ||||| | ||| | | |||| || |||| |||||||| ||| Sbjct 503617 CGGCCGCACCCTCGGTACCCCCATTGCCCTCACCGTCAACAACGAGGACCAGCGCCCCCG 503558 Query 18333 CGACTATTCCGA------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTA 18386 |||||| | | |||| |||| | ||||| ||||| |||||||||| |||||| Sbjct 503557 CGACTACGGCAACCAGACCATGGACAAGTTCCCGCGCCCCTCGCACGCCGACTTCACCTA 503498 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | || ||||||||||||||||| ||||| ||||| ||||| |||||||||||| Sbjct 503497 CCAGGAAAAGTACGGCATCAAGGCCTCGTCCGGCGGTGGCCGCAGCAGTGCCCGCGAGAC 503438 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | |||||||| |||||||| ||||| ||||| Sbjct 503437 CATTGCCCGCGTCGCTGCCGGCGCCGTCGCTGAGAA 503402 >seq19 Length=545716 Score = 161 bits (178), Expect = 1e-33 Identities = 304/447 (68%), Gaps = 15/447 (3%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| || || || |||||||| | || |||||||| Sbjct 482497 CTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGA 482556 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 482557 GGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACC 482616 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || ||||| |||||||| Sbjct 482617 GATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTC 482676 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||||| || || ||||| || || || | || | ||| || Sbjct 482677 GATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACC 482736 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| || ||||||| || |||||| |||| | |||||| || ||| || Sbjct 482737 CGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGT 482796 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | || || ||| || || | | |||| | ||||| || || Sbjct 482797 CTCAATAACACG------------GTCAAC-TCTGTCACCCCAAA--TGCCGACAGCAAC 482841 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||| | ||||| |||||| |||||||| | |||| | ||| |||||| || Sbjct 482842 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCGAGCTTCAGCAGGTACGA 482901 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA 1630511 || || |||| ||| ||||||||| Sbjct 482902 ACGCTCCAGGGTCTTGAAGCCAAAGTA 482928 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || || ||||| || || || || || || ||||| |||| ||| || | ||||| Sbjct 481829 TCAGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCC 481888 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 || ||||| ||||||||||||| ||| || | |||||| ||||||| ||| || |||| | Sbjct 481889 TCAGGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTG 481948 Query 1627990 ACGATCTCGTGCAG 1628003 || ||||||||| Sbjct 481949 GTGACCTCGTGCAG 481962 Score = 98.7 bits (108), Expect = 1e-14 Identities = 287/440 (65%), Gaps = 18/440 (4%) Strand=Plus/Plus Query 1628170 ATCTCGGTGCACAGGTTGGCCGACGTCG-TCGTACCCAGGTTCTGCTGGTTGGTGGTCAG 1628228 ||||| ||||||||||||| | | | | ||||||||||||| ||||||| | | | Sbjct 482066 ATCTCAGTGCACAGGTTGGA-GCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCG 482124 Query 1628229 GTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACGAT 1628288 |||| | |||||||| |||||| | || ||| |||||| |||| ||| | | || Sbjct 482125 GTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAAT 482184 Query 1628289 GGCCGACCAGA---TCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNN 1628345 ||| |||| | ||||| || | | |||| | || | ||||||| Sbjct 482185 GGCGTACCACAGCTTCTGG-GC-CTTGATCGACGCGCGGC-CACGGCCCTCTTGCTCGTA 482241 Query 1628346 NNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGA 1628405 ||||| || |||||||||| || |||||| || |||| Sbjct 482242 CTTTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTT 482301 Query 1628406 CGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGC---ATAAAGAGGTCACA 1628462 || || | || | |||||| | || || | || ||| || ||||| || Sbjct 482302 GGGGCACATCAGGGTCCAGTC---AGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGG 482358 Query 1628463 CGTCCACAGTGC--GTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 1628520 ||||||| || | |||||| ||||| || || ||||||||||||||||||||| Sbjct 482359 AATCCACAGCGCCAGGAAAAGA--TCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTG 482416 Query 1628521 TTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 1628580 ||||| || | || | | || |||||||||||||||||||| ||||||||| Sbjct 482417 CGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCA 482476 Query 1628581 CCCTTGCGCTTGCCGCCGCC 1628600 || ||||||| ||| || Sbjct 482477 CCAGGGCGCTTGTTGCCACC 482496 Score = 89.7 bits (98), Expect = 6e-12 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGA 1627393 ||||||| || || ||||| | ||||| || ||| ||| |||||| ||| Sbjct 481443 GGTTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACG 481502 Query 1627394 CCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCA 1627453 ||| | |||| |||||||||| ||||||||||| ||||||| ||||| |||| | Sbjct 481503 GCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAA 481562 Query 1627454 CGAGGAGCGAGTTGCGCAGGCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCC 1627512 || ||||||||||||| |||| ||| | || || || | |||| |||||||| Sbjct 481563 GCAGAAGCGAGTTGCGCACACCGTTCTGCTTGATCT-GCTCCTTGAGCGACGCCCAGTCC 481621 Query 1627513 CAGCGGCCGCT 1627523 ||| || |||| Sbjct 481622 CAGAGGTCGCT 481632 >seq18 Length=564976 Score = 141 bits (156), Expect = 1e-27 Identities = 229/324 (71%), Gaps = 9/324 (3%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || ||| |||||| ||||||||||| || | |||||||| Sbjct 230659 CGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGAT 230600 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | || ||||| | | |||| ||| ||| || || | | Sbjct 230599 GTTCTCCATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGGGCAAC 230540 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||| | Sbjct 230539 CAGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAG 230480 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || ||||| | |||| ||| ||||| ||||| || | ||||| ||| ||| Sbjct 230479 CAGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGAT 230420 Query 868930 GATCTGCCTGGGCA--CGTCGGCCGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGC 868985 ||||| ||| || | || | ||||| |||| | | | || | ||||||||| Sbjct 230419 GATCT-CCTCAACAAGCTTCTTGCTAGGGCGGGTGTTCAGGTG---CGAGAAGAGCAGGC 230364 Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||||| ||||| ||||| Sbjct 230363 AGGCAAAGTCGGTGTGCAGACCCT 230340 Score = 140 bits (154), Expect = 4e-27 Identities = 224/318 (70%), Gaps = 13/318 (4%) Strand=Plus/Minus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| ||||| || |||| |||||| | Sbjct 230369 GCAGGCA-GGCAAAGTCGG---TGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAA 230314 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || |||||||| || || ||||| ||||| || |||| | |||| |||| Sbjct 230313 AAGGTCAGACCGGGCATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCC 230254 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| ||||| |||||||||||||||||| | | || |||| ||||||| ||||| Sbjct 230253 GAGAAGAAGATACCCTCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAG--GTCGA-- 230198 Query 869330 CCCTCCTTGTTG---ATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 ||| || | |||||||| | |||||||||||||| | | | || | Sbjct 230197 --CTCGCGGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATG 230140 Query 869387 GTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATC 869446 |||||||||||| || |||| | | ||| || ||||||| ||||||||||| Sbjct 230139 GTGTCGATGGCGTTGAACAGGTAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATG 230080 Query 869447 AGGAGCGAATAGGTCTCC 869464 || ||||| || |||||| Sbjct 230079 AGCAGCGAGTACGTCTCC 230062 Score = 104 bits (114), Expect = 3e-16 Identities = 176/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||||||||| ||| | |||| | | | Sbjct 230063 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCT 230004 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||||||| | ||| || || ||| ||||||| || |||||||| || |||| Sbjct 230003 GGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCGA 229944 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGT 869807 | || |||||||||||| ||| |||| ||||| | | | | ||| ||||| Sbjct 229943 AGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAGT 229884 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | || || | ||||||||| ||||||| |||||||||||||| | Sbjct 229883 CGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAAGAGGCCTCGGCCTTCT 229824 Query 869868 TGTACATCTCCCA 869880 ||||||||| ||| Sbjct 229823 TGTACATCTGCCA 229811 >seq1 Length=4116995 Score = 136 bits (150), Expect = 5e-26 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||||| ||||| ||| |||| |||||| | ||||| ||||||| Sbjct 3416034 CCAACTACCTGGATATCAAGCCCCTGCTTGATGTTGGCTGCAAGACCGTGGCTAACATGA 3415975 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 3415974 TCAAGGGCAAGTCGCCCGAGGAGATTCGCAAGACCTTCAACAT 3415932 >seq14 Length=642483 Score = 116 bits (128), Expect = 5e-20 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || ||||||||| | || ||||||||||| ||||||| | | || |||| ||||| || Sbjct 157059 GGCCGCCACAAGCTCATTATCCTCGACGAAGCCGACTCCATGACTTCGGGCGCCCAACAA 157000 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 |||||||| ||| ||||||| | ||||||| || ||||| ||| | || |||||| Sbjct 156999 GCCCTGCGCCGCACAATGGAAATCTATTCCAACACCACCCGCTTCGCCTTTGCCTGCAAC 156940 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGC 1574244 ||| | | | |||||| | |||| |||||| || |||||| |||| | || || Sbjct 156939 CAGTCCAACAAGATTATCGAGCCGCTCC--AGTCGCGTTGTGCCATTTTGCGGTATGCGC 156882 Query 1574245 GCCTGGGTGACG 1574256 ||||| ||||| Sbjct 156881 GCCTGACTGACG 156870 >seq17 Length=619495 Score = 95.1 bits (104), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 1852069 GCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTT 1852128 ||||||||| || | | | ||||| || || | ||||| | ||||||| |||| || Sbjct 129063 GCTCATCTTACCAC---CAGAAAGGCCAGGAACCATGGGGTTCATCAGGTGGCAGCGGTT 129007 Query 1852129 CCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCG 1852188 | | |||| || |||| | |||| ||| | |||| |||||||||||||| | Sbjct 129006 CTTAAAGCCCAGCTTAGGCATGGCGTCGTGCGACAGACCAAAGATCTTGCGCTGGTCCAG 128947 Query 1852189 CCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 1852248 ||||| |||| ||| || || || |||| || |||||| || |||||| |||||||| Sbjct 128946 ACCGCCGAACTCGGCATCAACATCCAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 128887 Query 1852249 GAG 1852251 || Sbjct 128886 CAG 128884 >seq2 Length=3643318 Score = 95.1 bits (104), Expect = 1e-13 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACG-AGGC 344240 || ||||||||||| || |||||||||||||| | ||||||||||||| | | || ||| Sbjct 2882094 GTCGCCTTCCCCACAGAAACCGTCTACGGCCTGGCCGCCGACGCCACG-CGGTCGCCGGC 2882036 Query 344241 CGTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCAT 344291 ||||| |||||| | | ||||||||| ||||| |||||||| |||| Sbjct 2882035 GGTGCGCGGCATCTACGCCGCCAAGGGCCGTCCCTCTGACAACCCGCTCAT 2881985 >seq26 Length=133288 Score = 89.7 bits (98), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 507733 CACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGAC 507792 |||||||||||||||||||||||| |||||||||||| ||||| | || || ||||| Sbjct 33150 CACCTACAACGCCGACTTTGACGGTGACGAGATGAACATGCACTTCCCGCAAAACGAGAT 33091 Query 507793 GGCGCGCGCCGAGG 507806 ||||||||||||| Sbjct 33090 TGCGCGCGCCGAGG 33077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136738059510