Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq19 192 5e-44 seq6 118 1e-21 seq16 86.0 6e-12 >seq19 Length=545716 Score = 192 bits (212), Expect = 5e-44 Identities = 822/1287 (64%), Gaps = 28/1287 (2%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATAT-GTCGCGGTATTGTTGCAATATTTTG 138416 ||||||||||| |||||||| || | |||| |||| || || | | ||| || || Sbjct 481301 ATCTCCCACACAGTCTTGTACAGCGCCTTGATATCGTCG-GGAATGCTGGGAATGTTCTG 481359 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 || ||||| ||||||||||||| || |||||| || ||||| || | Sbjct 481360 GATAGATCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCCAGGTC 481419 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 | || || | ||| | ||| | ||||| || || || |||| || ||||| Sbjct 481420 CACCAGATCACGCAGCAGCCAAGGGTTGACAACCTGGAACTCGCCAGCCAGCACACGACG 481479 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 |||||||||| ||| | |||||||| | |||||||| ||||||||||| | ||| Sbjct 481480 CTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGT 481539 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | | || |||||||| ||| | || ||| || || || | ||||| ||||||| | Sbjct 481540 GCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTG 481599 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||||||||||| ||||||||| | ||||| || | |||||||| ||| |||| Sbjct 481600 CTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCTGGGCGTGACATTCCACATGTCGAACTG 481659 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | || ||| | |||| || || |||| | ||| ||| ||| | || Sbjct 481660 CAGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGC 481719 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 | || | ||| || ||| | | ||| || ||||| ||||| ||||| Sbjct 481720 AATTTCCATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAG 481779 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 | || |||||||| ||| | |||||||| ||| | ||| || || ||||| || Sbjct 481780 CTTGCGAGCCTCGGCAGACTCAAAAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACC 481839 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTG-CGGCTTC---GA 138952 || || || || || | || || || |||| || ||| ||| ||| || | Sbjct 481840 CTGAACACCAACACCAATGGGACGGTGACGCA----TGTTGCTGTTGTGGGCCTCAGGCA 481895 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTAT 139012 || || | ||| || || ||||| ||| | || ||||| || ||||| || | Sbjct 481896 CGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGT-GACC 481954 Query 139013 GCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGAC-GACGTCGACAAATTT 139070 | | | | | | || ||||| | | ||||| |||||| ||| || || | Sbjct 481955 TCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGA--- 482011 Query 139071 GTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGAC 139130 | | | ||| || | ||||||||| || || || || || | | ||| || | Sbjct 482012 ---GCC----AGCGAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAGTACTCAAT 482064 Query 139131 AATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCG 139190 ||| || | |||| || | ||| ||||| | || | || ||||| || || Sbjct 482065 AATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCG 482124 Query 139191 GTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||| || || ||||| ||||| |||| |||| || || || | ||| | ||| Sbjct 482125 GTTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAAT 482184 Query 139251 GAATTTGAACAAGTCCCTAGCTTGTATTTGACGCAC-GTAAAGTTCGTCGCGCTCGTACT 139309 | | ||| | | || | | | ||||| | | | | | || ||||||||| Sbjct 482185 GGCGTACCACAGCTTCTGGGCCT-TGATCGACGCGCGGCCACGGCCCTCTTGCTCGTACT 482243 Query 139310 TTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 ||||||| || | || || || |||||| |||| || | | |||| || | Sbjct 482244 TTTCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGG 482303 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 | ||||| || | ||| | ||||| || ||| ||| ||||||| ||||| ||||||| Sbjct 482304 GGCACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCC 482363 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGT 139489 ||| || | | | |||||| || || ||| || ||| || || Sbjct 482364 ACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGT 482423 Query 139490 TAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCC 139549 |||||| ||||| || || |||||||| || ||||| || ||||| | || || | Sbjct 482424 CAAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGC 482483 Query 139550 G---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCT 139606 | |||||||| || ||||||| || ||| || ||||| || |||| ||| || Sbjct 482484 GCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAA 482543 Query 139607 CCAGACCGCTCGCTGTTCCGTTGGTGC 139633 | |||| | | || ||||| |||| Sbjct 482544 TGATACCGTTGGAGGTACCGTTTGTGC 482570 >seq6 Length=1902109 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || ||| | | Sbjct 700970 ATGCAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCG 701029 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 701030 GACACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAG 701089 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||||||| | | | || ||||| ||| Sbjct 701090 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAAC 701149 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || || |||| |||| |||| || ||| Sbjct 701150 ATCCAGAAGGAGTCGACTCTGCATCTGGTTCTGCGCCTGCGTGGTGGC 701197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || ||||| || || || || || | | Sbjct 700742 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCG 700801 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||| || || Sbjct 700802 GATACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 700861 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || ||||| || ||||| |||||| | | | || || || ||| Sbjct 700862 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAAC 700921 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || |||| Sbjct 700922 ATCCAGAAGGAGTCTACTCTGCATCTGGT 700950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 107427 GATGCAGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 107486 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || ||||| ||||| || || || || || ||||| Sbjct 107487 GGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTCCCCCGGATCA 107546 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | |||| || || || Sbjct 107547 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 107606 Query 24883 CATTCAAAAGG 24893 ||| || |||| Sbjct 107607 CATCCAGAAGG 107617 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || || ||||| || || ||| | ||||||| | || | || || Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACGTCAAGTCC 700312 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || ||||| || || |||||| | || || || || || Sbjct 700313 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAAG 700372 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | || || || ||||| || ||||| || || || ||| Sbjct 700373 CAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 700432 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || |||| |||| || || Sbjct 700433 CTAGTCCTGCGTCTGCGTGGTGG 700455 >seq16 Length=638914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || || | ||||| | || | Sbjct 520758 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCCTCGGACACGATCGACAAC 520817 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || ||| ||||||| Sbjct 520818 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTC 520877 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 || || || |||||||||||| | | | |||| || || |||||||| |||| Sbjct 520878 GCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGG 520932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897431288400