Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18 170 3e-36 seq1 127 3e-23 seq19 125 1e-22 seq14 113 7e-19 seq7 98.7 2e-14 seq17 96.9 5e-14 >seq18 Length=564976 Score = 170 bits (188), Expect = 3e-36 Identities = 235/328 (72%), Gaps = 3/328 (1%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || |||| |||||| |||| || |||||||| || || ||||| Sbjct 230344 ACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTT 230285 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||| || |||| |||| ||||||||| ||||| ||||||||||||||||| Sbjct 230284 GCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAA 230225 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || || |||| |||||| || | || || | |||||||| | ||||| Sbjct 230224 GGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTC---GGAAATCCACTTGAGAGCCCA 230168 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || | |||||||||||| || |||| | || Sbjct 230167 GTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTG 230108 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | || ||||||| ||||||||||||||| |||||||| ||||| ||||||||||| || Sbjct 230107 GGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTC 230048 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 || |||||||||||| || |||||| Sbjct 230047 CATCATGATCTGGAAGCCGTAGAAGCAG 230020 Score = 140 bits (154), Expect = 5e-27 Identities = 228/325 (70%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 || |||||||| || || || || ||| |||||| ||||||||||| || | ||| Sbjct 230664 ACACCCGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGC 230605 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012 ||||| |||||| | || ||||| | | ||||| ||||||| || || Sbjct 230604 GAGATGTTCTCCATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGG 230545 Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072 | | ||||| ||||||||||| || ||||||||||| ||||||| ||||||||||| Sbjct 230544 GCAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATG 230485 Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132 || | || || ||||| | |||| | | ||||| ||||| || | ||||| ||| Sbjct 230484 CCAAGCAGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCG 230425 Query 794133 ATGATGATCTGCCTGGGCA--CGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 ||||||||| ||| || | || | | ||| || | || || | |||||| Sbjct 230424 GTGATGATCT-CCTCAACAAGCTTCTTGCTAGGGCGGGT-GTTCAGGTGCGAGAAGAGCA 230367 Query 794191 GGCAGGCAAAGTCGCAATGCAGACC 794215 |||||||||||||| |||||||| Sbjct 230366 GGCAGGCAAAGTCGGTGTGCAGACC 230342 >seq1 Length=4116995 Score = 127 bits (140), Expect = 3e-23 Identities = 90/103 (87%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| || ||||||||||| || ||| | || |||||||||||||| ||| | | Sbjct 3416034 CCAACTACCTGGATATCAAGCCCCTGCTTGATGTTGGCTGCAAGACCGTGGCTAACATGA 3415975 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753 |||||||||||||||||||||| || ||||||||||| ||||| Sbjct 3415974 TCAAGGGCAAGTCGCCCGAGGAGATTCGCAAGACCTTCAACAT 3415932 >seq19 Length=545716 Score = 125 bits (138), Expect = 1e-22 Identities = 333/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| || || || |||||||| | | |||||||| Sbjct 482497 CTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGA 482556 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 482557 GGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACC 482616 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || ||||| |||||||| Sbjct 482617 GATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTC 482676 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||||| | ||| ||||| || || || | | | ||| || Sbjct 482677 GATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACC 482736 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| || ||||||| || ||| | ||| |||||| | ||| || Sbjct 482737 CGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGT 482796 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 | | || || | || | ||| ||| | |||| | ||||| || || Sbjct 482797 CTCAATAACACG-GTCAAC---TCT-----GTC----ACCCCAAA--TGCCGACAGCAAC 482841 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956 ||||| ||||||| |||||| |||||||| | | ||||| | ||| |||||| Sbjct 482842 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCG---AGCTTCAGCAGGTA 482898 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 || || ||||||| | |||||||||| |||| | ||| || || | || Sbjct 482899 CGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCATACACAAT 482958 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||| || | |||||||| Sbjct 482959 GGCCGAGTCCAGCTCTTCCTTGTG 482982 Score = 116 bits (128), Expect = 6e-20 Identities = 284/432 (66%), Gaps = 6/432 (1%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641 ||| ||||||||||||| | || |||| |||||||||| ||||||||| | || Sbjct 482068 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGG 482125 Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701 ||| | |||||||| ||||||| | || || |||||| |||| ||| | ||| Sbjct 482126 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATG 482185 Query 2071702 GCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNN 2071761 || |||| | | | || | ||| | | | ||||||| Sbjct 482186 GCGTACCACAGCTTCTGGGCCTTGATCGACGCGCGGCCACGGCCCTCTTGCTCGTACTTT 482245 Query 2071762 NNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGG 2071821 | ||||| ||||| | |||||| ||| || |||||| || |||| ||| Sbjct 482246 TCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGG 482305 Query 2071822 CAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCAC 2071881 || | || | |||||| || || | || || ||| || || ||| ||||| Sbjct 482306 CACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAC 482365 Query 2071882 AG-GCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTC 2071940 || ||| ||| |||||||| || || ||||||||||||||||||||| |||||| Sbjct 482366 AGCGCCAGGAAA-AGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTC 482424 Query 2071941 GAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCG 2072000 || | || | | || |||||||||||||||||||| ||||||||| || ||| Sbjct 482425 AAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCG 482484 Query 2072001 CTTGCCGCCGCC 2072012 |||| ||| || Sbjct 482485 CTTGTTGCCACC 482496 Score = 93.3 bits (102), Expect = 7e-13 Identities = 272/412 (66%), Gaps = 14/412 (3%) Strand=Plus/Plus Query 2069385 GTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGT---CGATGGT 2069441 ||||||||||||| |||||||| | ||| | || || || ||||| | | | || Sbjct 481231 GTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGT 481290 Query 2069442 CACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGGCGGCACCTC 2069501 |||| | || | ||||||||| |||||| |||| ||||||| || || ||| | | Sbjct 481291 -ACGCTGC--GAAATCTCCCACACAGTCTTGTACAGCGCCTTGATAT-CGTCGGGAATGC 481346 Query 2069502 GTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGCGAAAGTCGGG 2069561 | || | ||| | || || | | | || |||| ||||| | || | Sbjct 481347 TGGG-----AATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTC 481401 Query 2069562 CGTCCACAGGCCGCGCGCCATCATGCGCTCG-ACCAGGTGGCGGTTGACCACGGTAAAGT 2069620 || |||||| || | ||| || | | || | ||| ||||||| || || | Sbjct 481402 CGACCACAGACCCAGGTCCACCA-GATCACGCAGCAGCCAAGGGTTGACAACCTGGAACT 481460 Query 2069621 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGT 2069680 |||| | ||||| || ||| ||| |||||| ||| ||| | |||| ||| Sbjct 481461 CGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGT 481520 Query 2069681 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCA 2069740 ||||||| ||||||||||| ||||||| ||||| |||| | || ||||||||||||| Sbjct 481521 TGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCA 481580 Query 2069741 GGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792 |||| ||| | | || || || | ||||||||||| || |||| Sbjct 481581 CACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCT 481632 Score = 93.3 bits (102), Expect = 7e-13 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 2070039 CGACGCCGTCGCCGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCG 2070097 ||| |||||| || || |||||||| || |||||||| || | |||||| || | Sbjct 481729 CGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATC-TGAGTGTTGAGCTTGCGAG 481787 Query 2070098 CGCCGGCGCTCTCCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCAC 2070155 | |||| ||| | |||| | || | | || || || || ||||| ||||| || Sbjct 481788 CCTCGGCAGACTCAAAAGGCATGCGCAGC--GCCAGGAAGGCATCAGCCAGACCCTGAAC 481845 Query 2070156 GCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTG 2070215 || || || || || ||||| |||| ||| || ||||||| ||||| |||||||| Sbjct 481846 ACCAACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGCACGGGGTAGTG 481905 Query 2070216 GTTGATGTCGATCACGCGGTTGAGGTTG 2070243 ||||| ||| || | |||||| |||||| Sbjct 481906 GTTGACGTCAATGATGCGGTTCAGGTTG 481933 >seq14 Length=642483 Score = 113 bits (124), Expect = 7e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 |||||||||||| | || |||||||| || ||||||| | | || |||| ||||| || Sbjct 157059 GGCCGCCACAAGCTCATTATCCTCGACGAAGCCGACTCCATGACTTCGGGCGCCCAACAA 157000 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||||| || ||||||| || || || || | ||||||||| Sbjct 156999 GCCCTGCGCCGCACAATGGAAATCTATTCCAACACCACCCGCTTCGCCTTTGCCTGCAAC 156940 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | | ||||| | |||||| ||||| ||||| ||||| | ||||||| Sbjct 156939 CAGTCCAACAAGATTATCGAGCCGCTCCAGTCGCGTTGTGCCATTTTGCGGTATGCGCGC 156880 Query 2019384 CTCACCGACG 2019393 || || |||| Sbjct 156879 CTGACTGACG 156870 >seq7 Length=1775211 Score = 98.7 bits (108), Expect = 2e-14 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| | | Sbjct 11120 GTACTTGGTGACAGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGGAG 11061 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557 |||||| ||||| |||||||||||| Sbjct 11060 GATCAGACGCACACTGGTCTGGATCTC 11034 >seq17 Length=619495 Score = 96.9 bits (106), Expect = 5e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 2411434 AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGG 2411493 ||||| || |||| ||||| | ||||||| ||| || |||||||| |||| | Sbjct 129044 AGGCCAGGAACCATGGGGTTCATCAGGTGGCAGCGGTTCTTAAAGCCCAGCTTAGGCATG 128985 Query 2411494 TGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 2411553 |||| ||| | ||||||||||||||||||| | ||||| |||| ||| || || Sbjct 128984 GCGTCGTGCGACAGACCAAAGATCTTGCGCTGGTCCAGACCGCCGAACTCGGCATCAACA 128925 Query 2411554 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 || |||| || |||||| || |||||| |||||||| Sbjct 128924 TCCAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 128887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243208763170