Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq18 170 3e-36
seq1 127 3e-23
seq19 125 1e-22
seq14 113 7e-19
seq7 98.7 2e-14
seq17 96.9 5e-14
>seq18
Length=564976
Score = 170 bits (188), Expect = 3e-36
Identities = 235/328 (72%), Gaps = 3/328 (1%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || |||| |||||| |||| || |||||||| || || |||||
Sbjct 230344 ACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGCATCAGACCACGCTT 230285
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||| || |||| |||| ||||||||| ||||| |||||||||||||||||
Sbjct 230284 GCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCCTCGACGGCGGCAAA 230225
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | || || |||| |||||| || | || || | |||||||| | |||||
Sbjct 230224 GGCCACCAGACGCTGGGCAAAGGTCGACTCGCGGTC---GGAAATCCACTTGAGAGCCCA 230168
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| | | | || | |||||||||||| || |||| | ||
Sbjct 230167 GTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAGGTAGCTGCGCTG 230108
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
| | || ||||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 230107 GGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCTCCGAGTGGATGTTCTC 230048
Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667
|| |||||||||||| || ||||||
Sbjct 230047 CATCATGATCTGGAAGCCGTAGAAGCAG 230020
Score = 140 bits (154), Expect = 5e-27
Identities = 228/325 (70%), Gaps = 4/325 (1%)
Strand=Plus/Minus
Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952
|| |||||||| || || || || ||| |||||| ||||||||||| || | |||
Sbjct 230664 ACACCCGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGC 230605
Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGC 794012
||||| |||||| | || ||||| | | ||||| ||||||| || ||
Sbjct 230604 GAGATGTTCTCCATGAAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGG 230545
Query 794013 GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATG 794072
| | ||||| ||||||||||| || ||||||||||| ||||||| |||||||||||
Sbjct 230544 GCAACCAGCAGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATG 230485
Query 794073 CCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCG 794132
|| | || || ||||| | |||| | | ||||| ||||| || | ||||| |||
Sbjct 230484 CCAAGCAGGGCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCG 230425
Query 794133 ATGATGATCTGCCTGGGCA--CGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190
||||||||| ||| || | || | | ||| || | || || | ||||||
Sbjct 230424 GTGATGATCT-CCTCAACAAGCTTCTTGCTAGGGCGGGT-GTTCAGGTGCGAGAAGAGCA 230367
Query 794191 GGCAGGCAAAGTCGCAATGCAGACC 794215
|||||||||||||| ||||||||
Sbjct 230366 GGCAGGCAAAGTCGGTGTGCAGACC 230342
>seq1
Length=4116995
Score = 127 bits (140), Expect = 3e-23
Identities = 90/103 (87%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710
|||||||||| || ||||||||||| || ||| | || |||||||||||||| ||| | |
Sbjct 3416034 CCAACTACCTGGATATCAAGCCCCTGCTTGATGTTGGCTGCAAGACCGTGGCTAACATGA 3415975
Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACAT 2035753
|||||||||||||||||||||| || ||||||||||| |||||
Sbjct 3415974 TCAAGGGCAAGTCGCCCGAGGAGATTCGCAAGACCTTCAACAT 3415932
>seq19
Length=545716
Score = 125 bits (138), Expect = 1e-22
Identities = 333/504 (66%), Gaps = 21/504 (4%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| || || || |||||||| | | ||||||||
Sbjct 482497 CTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGA 482556
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| || | ||| | ||| | ||| || | ||| | | ||
Sbjct 482557 GGTACCGTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACC 482616
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| || || ||| ||||||||| | || || | || || || ||||| ||||||||
Sbjct 482617 GATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTC 482676
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||||||||| |||||||||| | ||| ||||| || || || | | | ||| ||
Sbjct 482677 GATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACC 482736
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| || ||||||| || ||| | ||| |||||| | ||| ||
Sbjct 482737 CGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGT 482796
Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899
| | || || | || | ||| ||| | |||| | ||||| || ||
Sbjct 482797 CTCAATAACACG-GTCAAC---TCT-----GTC----ACCCCAAA--TGCCGACAGCAAC 482841
Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAGGTA 2073956
||||| ||||||| |||||| |||||||| | | ||||| | ||| ||||||
Sbjct 482842 ACGCATAATCATGTGCTGGGGACGCTCGACAATCTTGCCGTCG---AGCTTCAGCAGGTA 482898
Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016
|| || ||||||| | |||||||||| |||| | ||| || || | ||
Sbjct 482899 CGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCATACACAAT 482958
Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040
||| | ||| || | ||||||||
Sbjct 482959 GGCCGAGTCCAGCTCTTCCTTGTG 482982
Score = 116 bits (128), Expect = 6e-20
Identities = 284/432 (66%), Gaps = 6/432 (1%)
Strand=Plus/Plus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641
||| ||||||||||||| | || |||| |||||||||| ||||||||| | ||
Sbjct 482068 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGG 482125
Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701
||| | |||||||| ||||||| | || || |||||| |||| ||| | |||
Sbjct 482126 TTGCAGTGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATG 482185
Query 2071702 GCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNN 2071761
|| |||| | | | || | ||| | | | |||||||
Sbjct 482186 GCGTACCACAGCTTCTGGGCCTTGATCGACGCGCGGCCACGGCCCTCTTGCTCGTACTTT 482245
Query 2071762 NNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGG 2071821
| ||||| ||||| | |||||| ||| || |||||| || |||| |||
Sbjct 482246 TCGTACAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGG 482305
Query 2071822 CAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCAC 2071881
|| | || | |||||| || || | || || ||| || || ||| |||||
Sbjct 482306 CACATCAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAC 482365
Query 2071882 AG-GCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTC 2071940
|| ||| ||| |||||||| || || ||||||||||||||||||||| ||||||
Sbjct 482366 AGCGCCAGGAAA-AGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTC 482424
Query 2071941 GAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCG 2072000
|| | || | | || |||||||||||||||||||| ||||||||| || |||
Sbjct 482425 AAGGAACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCG 482484
Query 2072001 CTTGCCGCCGCC 2072012
|||| ||| ||
Sbjct 482485 CTTGTTGCCACC 482496
Score = 93.3 bits (102), Expect = 7e-13
Identities = 272/412 (66%), Gaps = 14/412 (3%)
Strand=Plus/Plus
Query 2069385 GTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCATGT---CGATGGT 2069441
||||||||||||| |||||||| | ||| | || || || ||||| | | | ||
Sbjct 481231 GTTGAGCGACTGGGACTGGTCGATAAAGGCACCACGATCAGCAGCCATCTGCACAACCGT 481290
Query 2069442 CACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGCGGCGGCACCTC 2069501
|||| | || | ||||||||| |||||| |||| ||||||| || || ||| | |
Sbjct 481291 -ACGCTGC--GAAATCTCCCACACAGTCTTGTACAGCGCCTTGATAT-CGTCGGGAATGC 481346
Query 2069502 GTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGGTCGCGAAAGTCGGG 2069561
| || | ||| | || || | | | || |||| ||||| | || |
Sbjct 481347 TGGG-----AATGTTCTGGATAGATCCGTTCTCCGCAATGATGCGGTTCTTCATGTTGTC 481401
Query 2069562 CGTCCACAGGCCGCGCGCCATCATGCGCTCG-ACCAGGTGGCGGTTGACCACGGTAAAGT 2069620
|| |||||| || | ||| || | | || | ||| ||||||| || || |
Sbjct 481402 CGACCACAGACCCAGGTCCACCA-GATCACGCAGCAGCCAAGGGTTGACAACCTGGAACT 481460
Query 2069621 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGT 2069680
|||| | ||||| || ||| ||| |||||| ||| ||| | |||| |||
Sbjct 481461 CGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGT 481520
Query 2069681 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCA 2069740
||||||| ||||||||||| ||||||| ||||| |||| | || |||||||||||||
Sbjct 481521 TGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCA 481580
Query 2069741 GGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGGCCGCT 2069792
|||| ||| | | || || || | ||||||||||| || ||||
Sbjct 481581 CACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAGAGGTCGCT 481632
Score = 93.3 bits (102), Expect = 7e-13
Identities = 148/208 (71%), Gaps = 6/208 (3%)
Strand=Plus/Plus
Query 2070039 CGACGCCGTCGCCGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCG 2070097
||| |||||| || || |||||||| || |||||||| || | |||||| || |
Sbjct 481729 CGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATC-TGAGTGTTGAGCTTGCGAG 481787
Query 2070098 CGCCGGCGCTCTCCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCAC 2070155
| |||| ||| | |||| | || | | || || || || ||||| ||||| ||
Sbjct 481788 CCTCGGCAGACTCAAAAGGCATGCGCAGC--GCCAGGAAGGCATCAGCCAGACCCTGAAC 481845
Query 2070156 GCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTG 2070215
|| || || || || ||||| |||| ||| || ||||||| ||||| ||||||||
Sbjct 481846 ACCAACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCAGGCACGGGGTAGTG 481905
Query 2070216 GTTGATGTCGATCACGCGGTTGAGGTTG 2070243
||||| ||| || | |||||| ||||||
Sbjct 481906 GTTGACGTCAATGATGCGGTTCAGGTTG 481933
>seq14
Length=642483
Score = 113 bits (124), Expect = 7e-19
Identities = 139/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263
|||||||||||| | || |||||||| || ||||||| | | || |||| ||||| ||
Sbjct 157059 GGCCGCCACAAGCTCATTATCCTCGACGAAGCCGACTCCATGACTTCGGGCGCCCAACAA 157000
Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323
||||| || || ||||||| || ||||||| || || || || | |||||||||
Sbjct 156999 GCCCTGCGCCGCACAATGGAAATCTATTCCAACACCACCCGCTTCGCCTTTGCCTGCAAC 156940
Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383
||| | | | ||||| | |||||| ||||| ||||| ||||| | |||||||
Sbjct 156939 CAGTCCAACAAGATTATCGAGCCGCTCCAGTCGCGTTGTGCCATTTTGCGGTATGCGCGC 156880
Query 2019384 CTCACCGACG 2019393
|| || ||||
Sbjct 156879 CTGACTGACG 156870
>seq7
Length=1775211
Score = 98.7 bits (108), Expect = 2e-14
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|||||||||||| |||||||||||||| || ||||||||| ||||||| || ||| | |
Sbjct 11120 GTACTTGGTGACAGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCGGGGAG 11061
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTC 1485557
|||||| ||||| ||||||||||||
Sbjct 11060 GATCAGACGCACACTGGTCTGGATCTC 11034
>seq17
Length=619495
Score = 96.9 bits (106), Expect = 5e-14
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 2411434 AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGG 2411493
||||| || |||| ||||| | ||||||| ||| || |||||||| |||| |
Sbjct 129044 AGGCCAGGAACCATGGGGTTCATCAGGTGGCAGCGGTTCTTAAAGCCCAGCTTAGGCATG 128985
Query 2411494 TGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 2411553
|||| ||| | ||||||||||||||||||| | ||||| |||| ||| || ||
Sbjct 128984 GCGTCGTGCGACAGACCAAAGATCTTGCGCTGGTCCAGACCGCCGAACTCGGCATCAACA 128925
Query 2411554 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591
|| |||| || |||||| || |||||| ||||||||
Sbjct 128924 TCCAGGTACTCCTCGTCCAGCAGCTGCATCAGCGGGTA 128887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243208763170
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