Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq16 123 2e-23
seq6 113 3e-20
>seq16
Length=638914
Score = 123 bits (136), Expect = 2e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || |||||||
Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||||
Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 520813
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| || | ||| |||||||| ||||| |||||||| || |
Sbjct 520812 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 520753
Query 34968 A 34968
|
Sbjct 520752 A 520752
>seq6
Length=1902109
Score = 113 bits (124), Expect = 3e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || || |||| |||| || || ||||| ||||||||
Sbjct 700933 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 700874
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || |||||||| | || | ||||||||||| | || || |||||
Sbjct 700873 AATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATT 700814
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || | ||| || |||| ||| || |||||||| || || ||||| ||
Sbjct 700813 GTCAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGAC 700754
Query 34966 AAAGATCTGCAT 34977
||||||||||||
Sbjct 700753 AAAGATCTGCAT 700742
Score = 111 bits (122), Expect = 1e-19
Identities = 146/200 (73%), Gaps = 8/200 (4%)
Strand=Plus/Minus
Query 34782 TGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGG 34841
|||| ||||||| ||||| ||||| || || |||| |||| ||||| ||||| || |
Sbjct 107623 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 107564
Query 34842 CGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGA 34901
|||||||||| || ||||| || | || | ||||||||||| | ||||| ||||
Sbjct 107563 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGA 107504
Query 34902 CGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
| || | ||||| || || ||| || || | ||| || ||||| ||||| |||
Sbjct 107503 C--AT--TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGG 107448
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || || ||||||||
Sbjct 107447 GTCTTGACGAAAATCTGCAT 107428
Score = 109 bits (120), Expect = 4e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 700725 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCC 700666
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| ||||| || |||||||| | || | |||||||||||
Sbjct 700665 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCC 700606
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | |||||| || | || ||||||
Sbjct 700605 TGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTC 700546
Query 34946 TTTCCCGTGAGGGTCTTTAC 34965
|| || ||||||||||| ||
Sbjct 700545 TTGCCGGTGAGGGTCTTGAC 700526
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| ||||| || | || ||||||||| ||||| || || || || | || ||||
Sbjct 701182 CAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCATC 701123
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || || |||||||| || |||||||| | || | |||||||||||
Sbjct 701122 CTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTC 701063
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || ||||| | |||| || | ||||| || | || |||||
Sbjct 701062 CTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATGGT 701003
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || || ||||| ||||||||||||||
Sbjct 701002 CTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 95.1 bits (104), Expect = 8e-15
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | |||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 700441 CAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATC 700382
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || ||||| || || ||||||||||| | || | |||||||||||
Sbjct 700381 CTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTC 700322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692680918570
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