Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq6 113 3e-20
>seq6
Length=1902109
Score = 113 bits (124), Expect = 3e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| |||| ||| || || || || || || ||||| ||||| | || || || |
Sbjct 701184 CGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCA 701125
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || || || || |||||| | |||| | ||||| ||||| ||||||||||| |||
Sbjct 701124 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 701065
Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|| || ||| || | |||||| | || | ||||| || ||| || || || || ||
Sbjct 701064 TCCTG-AATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGAT 701006
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| |||||||| | || || ||||| ||||||||
Sbjct 701005 GGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| ||||||| || || || || || || || ||||| || || | || ||||||
Sbjct 700729 ACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACC 700670
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || ||||| || | |||| | ||||| ||||| ||||||||||| ||
Sbjct 700669 ATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTT 700610
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||| || ||| || | ||||| | || | || || || || ||||| ||||| |
Sbjct 700609 GTCCTG-AATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAA 700551
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780
| || ||||| || | ||| || || | |||
Sbjct 700550 TGGTCTTGCCGGTGAGGGTCTTGACGACTAT 700520
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658
|| || ||||| || || | | ||||| ||| || || || |||||||| | |||
Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556
Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718
| | ||||||||||| ||||| ||||| ||||| || | ||| |||||| | ||
Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496
Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778
| |||||| || || || || || || || || || || || | ||| || || ||
Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436
Query 29779 ATCTGCATTTT 29789
|||||||| ||
Sbjct 107435 ATCTGCATCTT 107425
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || | || |||||| || | || || ||||| || || || ||||| || || | |
Sbjct 700455 CCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 700396
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || ||| ||| || || || || ||||| | || | | |||||| ||||| |||
Sbjct 700395 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGA 700336
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|||||||| ||||| || | || ||||| | || | ||||| ||| ||| ||
Sbjct 700335 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACC 700276
Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762
|| || || || || ||||| ||
Sbjct 700275 TCTAGCGTGATGGTCTTGCCCGT 700253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219059154230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |