Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq6 136 8e-27
>seq6
Length=1902109
Score = 136 bits (150), Expect = 8e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||||||| | |||||||| || || ||||| || || ||||| || || | | ||
Sbjct 701184 CGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGGCCA 701125
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || ||||||||||| || | || || || ||||| || || |||||
Sbjct 701124 TCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 701065
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| |||||||| | || ||||| |||||||| || | ||| || || | || ||
Sbjct 701064 TCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACCTCTAGCGTGATG 701005
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| |||| |||||| ||||| ||||||||
Sbjct 701004 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| ||||| | ||||||||||| || ||||| || || || || || ||| | | |||
Sbjct 700956 CGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCA 700897
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || || || || | || || || ||||| || || |||||
Sbjct 700896 TCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTG 700837
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| | || ||||| ||||| ||||| | || || || | || ||
Sbjct 700836 TCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACCTCAAGGGTGATA 700777
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || | ||||| ||||| ||||||||
Sbjct 700776 GTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981826822610170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |