Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq19 159 3e-34 >seq19 Length=545716 Score = 159 bits (176), Expect = 3e-34 Identities = 977/1543 (63%), Gaps = 51/1543 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| ||||||||||| | | || | ||| |||| | ||| Sbjct 481445 TTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGC 481504 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| |||| || ||||| | || || | |||| | || || ||||| ||| | | Sbjct 481505 TCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGC 481564 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | | || || |||| ||||| | ||| | ||||| | | ||||||||| Sbjct 481565 AGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAG 481624 Query 147073 ATCGACG-AGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 | | || |||||| || |||||||||||| |||| || | || || |||| Sbjct 481625 A-GGTCGCTGGGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGA 481683 Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC-TTGCCTCGAGCG 147190 || | |||||| |||| | || || | | | ||||| || | ||| || | Sbjct 481684 ACCCTCATACGTAGAGTAGGTACCCTC-CTCCTTGGCAATTTCCATCGAGGCCGTCAGGG 481742 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| |||||||| ||| || |||| || | || || | ||| Sbjct 481743 CAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAA 481802 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 ||||||| ||||| || |||||||| |||| |||||| | ||| || || || || | Sbjct 481803 AAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGAC 481862 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATC 147369 | || ||||||| | || ||| | | ||| ||||||||| ||||| || Sbjct 481863 GGTGACGCATGTTGCTGTTGTGGGC-CTCAGGCACGGGGTAGTGGTTGACGTCAATGATG 481921 Query 147370 TTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA--AG 147427 ||| ||||| ||||| ||||| || || | | || |||| ||| || || | Sbjct 481922 CGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTCG 481981 Query 147428 TCC----CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483 | | || |||||| ||| | | || || | || ||||| ||||| ||| Sbjct 481982 TTCTTGTTGTAGTCGACA--AACG-ACGG---CAGAGCCAGCGAAGCCAGGTTGCACACG 482035 Query 147484 GCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542 || ||| || |||| | | ||||| | || || | |||||||||| || || Sbjct 482036 GCAACCTCATCAGGCG-CACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGAT 482094 Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 | |||| || | ||| ||||| || || ||||| ||| ||| | |||||| |||| Sbjct 482095 GGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGG 482154 Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC-----TCG 147656 ||| |||||| || | || | || | || ||| | ||| || ||| Sbjct 482155 GTTGCCTGTCTCGGTCTGGGCCTCCA-GAATGGCGTACCACAGCTTCTGGGCCTTGATCG 482213 Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716 || ||| ||| |||||||| | |||||| ||||||| ||||||||| || Sbjct 482214 -ACGCGCGGCC----ACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCCTC 482268 Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776 |||||||||||| || ||||| || |||| | || |||||||| | ||| ||| Sbjct 482269 GCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTT 482328 Query 147777 CGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836 | | || || ||| || ||||| || | ||||||||| | ||||||||| || Sbjct 482329 CTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGC 482388 Query 147837 TTTGCAA------TCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTC 147890 || | |||| | || | ||||| || | ||| | | | | || Sbjct 482389 ---GCGAACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAACACATC 482442 Query 147891 GGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTC 147947 |||||||| || || | ||| | ||| | ||||| ||| || || |||||||| Sbjct 482443 CGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTC 482502 Query 147948 GACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCC 148007 ||| | ||| | ||||||| ||||| |||| |||||| | ||| | | || || Sbjct 482503 GACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACC 482562 Query 148008 GTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCC 148067 ||| ||| || | ||| ||| || | ||| || || | || || || Sbjct 482563 GTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACCGATACC 482622 Query 148068 GCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGC 148126 || ||| | ||| || || ||| ||| | || ||| ||||| ||||| Sbjct 482623 ACCAGCCAT-CTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCG 482681 Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186 ||| | || | | ||| || || || || ||| || | |||| ||||| Sbjct 482682 AGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGT 482741 Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246 |||||| ||||| ||||| || || || || | ||| | | |||||||||| Sbjct 482742 TGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAA 482801 Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306 || | || | ||| || |||||| | || || ||||| | ||||||||| | Sbjct 482802 TAACACGGTCAACTCTGTCACCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGG 482861 Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365 | || ||| ||| |||| || || ||| || || || | || ||||| ||| | Sbjct 482862 GACGCTCGACAATCTTG-CCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAG 482920 Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 |||||||||| ||| | || || | || || | ||||||| Sbjct 482921 CCAAAGTACTGGTAGTTGAAGTCACGGTCATACACAATGGCCG 482963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611021270800