Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq19 159 3e-34
>seq19
Length=545716
Score = 159 bits (176), Expect = 3e-34
Identities = 977/1543 (63%), Gaps = 51/1543 (3%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || |||||||| ||||||||||| | | || | ||| |||| | |||
Sbjct 481445 TTGACAACCTGGAACTCGCCAGCCAGCACACGACGCTGGTAAATGTTGGAAGTGTACGGC 481504
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
||||| |||| || ||||| | || || | |||| | || || ||||| ||| | |
Sbjct 481505 TCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGCTGGCCGTCGGCATCGGCGCAAGC 481564
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| | || || |||| ||||| | ||| | ||||| | | |||||||||
Sbjct 481565 AGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTGCTCCTTGAGCGACGCCCAGTCCCAG 481624
Query 147073 ATCGACG-AGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131
| | || |||||| || |||||||||||| |||| || | || || ||||
Sbjct 481625 A-GGTCGCTGGGCGTGACATTCCACATGTCGAACTGCAGGATGCCCTGAGAAACGGGCGA 481683
Query 147132 GCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC-TTGCCTCGAGCG 147190
|| | |||||| |||| | || || | | | ||||| || | ||| || |
Sbjct 481684 ACCCTCATACGTAGAGTAGGTACCCTC-CTCCTTGGCAATTTCCATCGAGGCCGTCAGGG 481742
Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250
| | | ||| |||||||| ||| || |||| || | || || | |||
Sbjct 481743 CAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAGCTTGCGAGCCTCGGCAGACTCAA 481802
Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310
||||||| ||||| || |||||||| |||| |||||| | ||| || || || || |
Sbjct 481803 AAGGCATGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGAACACCAACACCAATGGGAC 481862
Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAATAATC 147369
| || ||||||| | || ||| | | ||| ||||||||| ||||| ||
Sbjct 481863 GGTGACGCATGTTGCTGTTGTGGGC-CTCAGGCACGGGGTAGTGGTTGACGTCAATGATG 481921
Query 147370 TTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA--AG 147427
||| ||||| ||||| ||||| || || | | || |||| ||| || || |
Sbjct 481922 CGGTTCAGGTTGCGCACAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTACTCG 481981
Query 147428 TCC----CGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACG 147483
| | || |||||| ||| | | || || | || ||||| ||||| |||
Sbjct 481982 TTCTTGTTGTAGTCGACA--AACG-ACGG---CAGAGCCAGCGAAGCCAGGTTGCACACG 482035
Query 147484 GCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTAT 147542
|| ||| || |||| | | ||||| | || || | |||||||||| || ||
Sbjct 482036 GCAACCTCATCAGGCG-CACAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTGCGGAT 482094
Query 147543 GACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
| |||| || | ||| ||||| || || ||||| ||| ||| | |||||| ||||
Sbjct 482095 GGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAACGG 482154
Query 147603 TCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC-----TCG 147656
||| |||||| || | || | || | || ||| | ||| || |||
Sbjct 482155 GTTGCCTGTCTCGGTCTGGGCCTCCA-GAATGGCGTACCACAGCTTCTGGGCCTTGATCG 482213
Query 147657 CACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTC 147716
|| ||| ||| |||||||| | |||||| ||||||| ||||||||| ||
Sbjct 482214 -ACGCGCGGCC----ACGGCCCTCTTGCTCGTACTTTTCGTACAGGGCCTCAAACTCCTC 482268
Query 147717 GCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTC 147776
|||||||||||| || ||||| || |||| | || |||||||| | ||| |||
Sbjct 482269 GCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTT 482328
Query 147777 CGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGC 147836
| | || || ||| || ||||| || | ||||||||| | ||||||||| ||
Sbjct 482329 CTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGC 482388
Query 147837 TTTGCAA------TCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTC 147890
|| | |||| | || | ||||| || | ||| | | | | ||
Sbjct 482389 ---GCGAACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAACTCAAACACATC 482442
Query 147891 GGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTC 147947
|||||||| || || | ||| | ||| | ||||| ||| || || ||||||||
Sbjct 482443 CGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTC 482502
Query 147948 GACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCC 148007
||| | ||| | ||||||| ||||| |||| |||||| | ||| | | || ||
Sbjct 482503 GACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACC 482562
Query 148008 GTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCC 148067
||| ||| || | ||| ||| || | ||| || || | || || ||
Sbjct 482563 GTTTGTGCCGGCAATGTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACCGATACC 482622
Query 148068 GCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGC 148126
|| ||| | ||| || || ||| ||| | || ||| ||||| |||||
Sbjct 482623 ACCAGCCAT-CTTGGAGATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCG 482681
Query 148127 TGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCG 148186
||| | || | | ||| || || || || ||| || | |||| |||||
Sbjct 482682 AGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGT 482741
Query 148187 AGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAA 148246
|||||| ||||| ||||| || || || || | ||| | | ||||||||||
Sbjct 482742 TGAAAAGAGTGGGCGAGGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAA 482801
Query 148247 TAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTG 148306
|| | || | ||| || |||||| | || || ||||| | ||||||||| |
Sbjct 482802 TAACACGGTCAACTCTGTCACCCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGG 482861
Query 148307 GTCGTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAA 148365
| || ||| ||| |||| || || ||| || || || | || ||||| ||| |
Sbjct 482862 GACGCTCGACAATCTTG-CCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAG 482920
Query 148366 CCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|||||||||| ||| | || || | || || | |||||||
Sbjct 482921 CCAAAGTACTGGTAGTTGAAGTCACGGTCATACACAATGGCCG 482963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611021270800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |