Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq18 214 3e-49
seq19 145 1e-28
seq14 125 1e-22
>seq18
Length=564976
Score = 214 bits (236), Expect = 3e-49
Identities = 360/512 (70%), Gaps = 22/512 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || |||||||||||||| || ||||| ||||||||| | || |
Sbjct 229807 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATC 229865
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| ||||| ||| ||| | | ||||| | |||
Sbjct 229866 TGTCCAAGGATCTTCACG----ACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTC 229921
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| ||||||||| ||||| || ||| || || ||||| || ||||||| |||
Sbjct 229922 ATCTCGCACGTCCTGGCCTTCTT-CGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGT 229980
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| || || | |||||||| | || ||||| || | || ||||| ||||||||
Sbjct 229981 CGAGCGTTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 230040
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || || |||||||| || |||||||||||| |||||||
Sbjct 230041 CATGATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGA 230100
Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| | | || | |||| || |||||||||||| | || | | | ||
Sbjct 230101 GCCTGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAA 230160
Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
|||||||||||| | |||||||| | || ||| ||||| ||||||| ||||
Sbjct 230161 GGCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGAG----TCGAC-CTTTGCCCAGCGT 230215
Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
|| || | |||||||| ||||||||| ||||| ||||||||| |||| | |||| ||
Sbjct 230216 CTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTC 230275
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||| ||||| || || |||||||||||
Sbjct 230276 TGGCTGCGCAAGCGTGGTCTGATGCCCGGTCT 230307
Score = 114 bits (126), Expect = 2e-19
Identities = 162/224 (72%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577
|| |||||||| ||| ||||| | || ||||| ||||| | | |||| | |||||
Sbjct 230412 AGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTT 230471
Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637
|| || | |||||||||||| | |||||| |||||||||| | |||||||||||
Sbjct 230472 GCGCCCTGCTTGGCATGAACGCCGAC-CTCATGAAGCAGTACATTG-AGTTTGTCGCCGA 230529
Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697
||| ||||| | || || ||| | |||||| |||||| | | ||||| || |
Sbjct 230530 CCGTCTGCTGGTTGCCCTTGGCAAC-GAGAAGGTCTACCGCTCCACGAACCCCTTTGACT 230588
Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741
|||||| |||||||| | || ||||||||||| ||||||
Sbjct 230589 TCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAG 230632
>seq19
Length=545716
Score = 145 bits (160), Expect = 1e-28
Identities = 340/503 (68%), Gaps = 19/503 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | || ||| | ||||| | | ||| ||||| |||| |||||||
Sbjct 482982 CACAAGGAAGAGCTGGACTCGGCCATTGTGTATGACCGTGACTTCAACTACCAGTACTTT 482923
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
|| | |||| || || || |||||| | ||| || || | | ||||||||
Sbjct 482922 GGCTTCAAGACCCTGGAGCGTTCGTACCTG-CTGAAGCTCGACGGCAAGATTGTCGAGCG 482864
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| | |||||||| || | ||| ||| |||| | | || || |||
Sbjct 482863 TCCCCAGCACATGATTATGCGTGTTGCTGTCGGC-ATT-TGGGGTGACAGA-GTTGACCG 482807
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919
|| | ||| |||| | |||| |||||| |||| ||| |||||| |
Sbjct 482806 TGTTATTGAG-ACGTACA----ACCT-------CATGTCT-AGCAAGTTCTTCACCCACG 482760
Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979
| ||||||| || || || || || ||||| | | ||| || || ||||| |||
Sbjct 482759 CCTCGCCCACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGG 482700
Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039
| |||||||||| || |||||||||||||| || || || |||||| || || | |
Sbjct 482699 TTGACATGAAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGA 482640
Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099
|||||||| ||| || || |||||| | | ||| | || ||| | ||| | |
Sbjct 482639 TCTCCAAGATGGCTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGGCTCGT 482580
Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159
|| | || ||||| ||||| |||||||| | | |||||||| || || || |||
Sbjct 482579 ACATTGCCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACA 482520
Query 260160 ACACGGCGCGCTACGTCGACCAG 260182
|||| || |||||||||||||||
Sbjct 482519 ACACTGCCCGCTACGTCGACCAG 482497
Score = 93.3 bits (102), Expect = 6e-13
Identities = 288/441 (65%), Gaps = 14/441 (3%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| || ||||||||| |||||||| ||||||||||| || |
Sbjct 482496 GGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGATGTG 482437
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
| | | || ||||| |||||||||||||||| |||| || ||| |||
Sbjct 482436 TTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGA----GGAGGTTCG--CGCCCGC 482383
Query 261908 GATCTCTTTTACGGC-CTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG 261966
||||| ||| ||| ||||||| ||| || || ||| || | | || | ||
Sbjct 482382 GATCT-TTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAA-GAACG 482325
Query 261967 C-GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025
| |||||| | || | ||||| |||| || |||||| || ||||| |||| ||
Sbjct 482324 CTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGG 482265
Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCG 262085
||||| ||||| || || || | ||||| | |
Sbjct 482264 AGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTG-GCCGCGCGTCGATCAAG 482206
Query 262086 CACGACA-GATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144
| | | | | |||| |||||| | | |||||| | |||||| |||| || | ||||
Sbjct 482205 GCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCATG 482146
Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGA 262203
| ||||||||| | ||||| | ||||||||| |||||||||| |||| | |||
Sbjct 482145 CTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGC 482086
Query 262204 GGCCAACCTGTGCACCGAGAT 262224
||||||||||||| |||||
Sbjct 482085 T-CCAACCTGTGCACTGAGAT 482066
>seq14
Length=642483
Score = 125 bits (138), Expect = 1e-22
Identities = 178/248 (72%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915
||||||| |||||| || | |||| ||||||||||| ||| || | |||||| | |
Sbjct 156870 CGTCAGTCAGGCGCGCATACCGCAAAATGGCACAACGCGACTGGAGCGGCTCGATAATCT 156929
Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975
| ||| ||||||||| | ||| || || || || |||| || ||||||| ||
Sbjct 156930 TGTTGGACTGGTTGCAGGCAAAGGCGAAGCGGGTGGTGTTGGAATAGATTTCCATTGTGC 156989
Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035
|| ||||| |||||||| ||| || | | ||||||| ||||||||||| |||| ||
Sbjct 156990 GGCGCAGGGCTTGTTGGGCGCCCGAAGTCATGGAGTCGGCTTCGTCGAGGATAATGAGCT 157049
Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGT-TTGATGATCTTGCGC 333094
||||||| || | || ||| ||| ||||| ||| ||| ||||| ||||||
Sbjct 157050 TGTGGCGGCCATTGGGGAGAGTGACCTTTTTCTGGGC-AAATGTCTTGATTCGGTTGCGC 157108
Query 333095 ACGACGTC 333102
|| |||||
Sbjct 157109 ACAACGTC 157116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177808306444860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |