Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 214 3e-49 seq19 145 1e-28 seq14 125 1e-22 >seq18 Length=564976 Score = 214 bits (236), Expect = 3e-49 Identities = 360/512 (70%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||| ||||||||| | || | Sbjct 229807 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACGGCCGAGGAGATTGATC 229865 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | | ||||| | ||| Sbjct 229866 TGTCCAAGGATCTTCACG----ACTGGAACAACCGCATGAACAAGGACGAAAAGTACTTC 229921 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||||||| ||||| || ||| || || ||||| || ||||||| ||| Sbjct 229922 ATCTCGCACGTCCTGGCCTTCTT-CGCTGCTTCGGACGGCATTGTCAACGAGAACTTGGT 229980 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || || || | |||||||| | || ||||| || | || ||||| |||||||| Sbjct 229981 CGAGCGTTTCTCGGGTGAGGTCCAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGAT 230040 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || |||||||| || |||||||||||| ||||||| Sbjct 230041 CATGATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGA 230100 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || | | || | |||| || |||||||||||| | || | | | || Sbjct 230101 GCCTGCCCAGCGCAGCTACCTGTTCAACGCCATCGACACCATTCCTTGCATTCGCCGCAA 230160 Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| | |||||||| | || ||| ||||| ||||||| |||| Sbjct 230161 GGCCGACTGGGCTCTCAAGTGGATTTCCGACCGCGAG----TCGAC-CTTTGCCCAGCGT 230215 Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||||| ||||||||| ||||| ||||||||| |||| | |||| || Sbjct 230216 CTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCGCTTTCGCCTCCATTTTC 230275 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||||| || || ||||||||||| Sbjct 230276 TGGCTGCGCAAGCGTGGTCTGATGCCCGGTCT 230307 Score = 114 bits (126), Expect = 2e-19 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| ||| ||||| | || ||||| ||||| | | |||| | ||||| Sbjct 230412 AGGAGATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTT 230471 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || || | |||||||||||| | |||||| |||||||||| | ||||||||||| Sbjct 230472 GCGCCCTGCTTGGCATGAACGCCGAC-CTCATGAAGCAGTACATTG-AGTTTGTCGCCGA 230529 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||| ||||| | || || ||| | |||||| |||||| | | ||||| || | Sbjct 230530 CCGTCTGCTGGTTGCCCTTGGCAAC-GAGAAGGTCTACCGCTCCACGAACCCCTTTGACT 230588 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||||||| | || ||||||||||| |||||| Sbjct 230589 TCATGGAGAACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAG 230632 >seq19 Length=545716 Score = 145 bits (160), Expect = 1e-28 Identities = 340/503 (68%), Gaps = 19/503 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| | ||||| | | ||| ||||| |||| ||||||| Sbjct 482982 CACAAGGAAGAGCTGGACTCGGCCATTGTGTATGACCGTGACTTCAACTACCAGTACTTT 482923 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | |||| || || || |||||| | ||| || || | | |||||||| Sbjct 482922 GGCTTCAAGACCCTGGAGCGTTCGTACCTG-CTGAAGCTCGACGGCAAGATTGTCGAGCG 482864 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| || | ||| ||| |||| | | || || ||| Sbjct 482863 TCCCCAGCACATGATTATGCGTGTTGCTGTCGGC-ATT-TGGGGTGACAGA-GTTGACCG 482807 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 || | ||| |||| | |||| |||||| |||| ||| |||||| | Sbjct 482806 TGTTATTGAG-ACGTACA----ACCT-------CATGTCT-AGCAAGTTCTTCACCCACG 482760 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | ||||||| || || || || || ||||| | | ||| || || ||||| ||| Sbjct 482759 CCTCGCCCACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGG 482700 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| || |||||||||||||| || || || |||||| || || | | Sbjct 482699 TTGACATGAAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGA 482640 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||||||| ||| || || |||||| | | ||| | || ||| | ||| | | Sbjct 482639 TCTCCAAGATGGCTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGGCTCGT 482580 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || ||||| ||||| |||||||| | | |||||||| || || || ||| Sbjct 482579 ACATTGCCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACA 482520 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 482519 ACACTGCCCGCTACGTCGACCAG 482497 Score = 93.3 bits (102), Expect = 6e-13 Identities = 288/441 (65%), Gaps = 14/441 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || ||||||||| |||||||| ||||||||||| || | Sbjct 482496 GGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGATGTG 482437 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | || ||||| |||||||||||||||| |||| || ||| ||| Sbjct 482436 TTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGA----GGAGGTTCG--CGCCCGC 482383 Query 261908 GATCTCTTTTACGGC-CTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG 261966 ||||| ||| ||| ||||||| ||| || || ||| || | | || | || Sbjct 482382 GATCT-TTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAA-GAACG 482325 Query 261967 C-GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGG 262025 | |||||| | || | ||||| |||| || |||||| || ||||| |||| || Sbjct 482324 CTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGG 482265 Query 262026 CCTTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCG 262085 ||||| ||||| || || || | ||||| | | Sbjct 482264 AGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTG-GCCGCGCGTCGATCAAG 482206 Query 262086 CACGACA-GATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 | | | | | |||| |||||| | | |||||| | |||||| |||| || | |||| Sbjct 482205 GCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCATG 482146 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGA 262203 | ||||||||| | ||||| | ||||||||| |||||||||| |||| | ||| Sbjct 482145 CTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGC 482086 Query 262204 GGCCAACCTGTGCACCGAGAT 262224 ||||||||||||| ||||| Sbjct 482085 T-CCAACCTGTGCACTGAGAT 482066 >seq14 Length=642483 Score = 125 bits (138), Expect = 1e-22 Identities = 178/248 (72%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 ||||||| |||||| || | |||| ||||||||||| ||| || | |||||| | | Sbjct 156870 CGTCAGTCAGGCGCGCATACCGCAAAATGGCACAACGCGACTGGAGCGGCTCGATAATCT 156929 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | ||| ||||||||| | ||| || || || || |||| || ||||||| || Sbjct 156930 TGTTGGACTGGTTGCAGGCAAAGGCGAAGCGGGTGGTGTTGGAATAGATTTCCATTGTGC 156989 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || ||||| |||||||| ||| || | | ||||||| ||||||||||| |||| || Sbjct 156990 GGCGCAGGGCTTGTTGGGCGCCCGAAGTCATGGAGTCGGCTTCGTCGAGGATAATGAGCT 157049 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGT-TTGATGATCTTGCGC 333094 ||||||| || | || ||| ||| ||||| ||| ||| ||||| |||||| Sbjct 157050 TGTGGCGGCCATTGGGGAGAGTGACCTTTTTCTGGGC-AAATGTCTTGATTCGGTTGCGC 157108 Query 333095 ACGACGTC 333102 || ||||| Sbjct 157109 ACAACGTC 157116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808306444860