Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq16 114 1e-20 >seq6 Length=1902109 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| ||| | || |||||| || ||||||||||||| Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||||||||| ||||| |||| ||||||||||||| |||| Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| ||||| ||| | | | | | |||||| |||||| ||| Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACC 701017 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || |||| || |||||||| |||||||| Sbjct 701016 TCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||| ||| | ||| |||||| || |||||||| |||| Sbjct 700968 CCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 700909 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || |||| ||||||||||||| |||| Sbjct 700908 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 700849 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | | | | || || || |||||| Sbjct 700848 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACC 700789 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || || | ||| || ||||| |||||||| Sbjct 700788 TCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| || || || | || ||||||||||| || || || | Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| |||||||| |||| |||| || |||||||||| ||| || ||| | | | Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | ||||| || || ||||| | || ||||| |||||||||| || || || | Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 107437 AAATCTGCAT 107428 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || |||||||||||||| || || Sbjct 700420 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 700361 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| ||||| | |||||||||| |||||| ||| | || Sbjct 700360 AATGAGACGTTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 700302 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | |||||| ||||| ||||| | |||||| || || ||||||| Sbjct 700301 TGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTGATGGTCTTGCCCGTCA 700251 >seq16 Length=638914 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| ||||||||||| |||| || ||| || | || ||||||||||| || || || | Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| || |||||||||| |||||| ||| | |||| Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 520814 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||||| || || || |||||||||| || || || Sbjct 520813 TCGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 520754 Query 35726 AA 35727 || Sbjct 520753 AA 520752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793430952400