Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq19 123 3e-23 seq6 122 9e-23 seq16 100 3e-16 >seq19 Length=545716 Score = 123 bits (136), Expect = 3e-23 Identities = 544/850 (64%), Gaps = 11/850 (1%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGA-AGACATTGACGCCGCCTT 7622 || |||||| | |||| || || || |||||| || || ||| ||||| | | Sbjct 482859 CAGCACATGATTATGCGTGTTGCTGTCGGCATTTGGGGTGACAGAG-TTGACCGTGTTAT 482801 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGC 7682 || |||||| | | |||||| || || || ||||| |||||||| | || Sbjct 482800 TGAGACGTACAACCTCATGTCTAGCAAGTTCTTCACCCACGCCTCGCCCACTCTTTTCAA 482741 Query 7683 CGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 |||||| || | | |||| ||||||| || || || | |||| |||||| Sbjct 482740 CGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATGAAGGAAGACTC 482681 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGC 7800 ||||| ||||||||| | || || | || ||| || | || ||||| | ||| || Sbjct 482680 GATCGAGGGCATTTACGATACTCT-CAAGACTTGTGCTATGATCTCCAAG-ATGGCTGGT 482623 Query 7801 GGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAAC 7860 || || ||||| || || || | | || |||| || ||| | ||| ||| Sbjct 482622 GGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGGCTCGTACATTGCCGGCACAAAC 482563 Query 7861 GGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTA 7920 || | ||| |||| | |||||| |||| |||||||| ||| | | || | || Sbjct 482562 GGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCGCTACGTC 482503 Query 7921 GACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 |||||||| || || |||| || ||| |||||| || ||||||||||||||||| Sbjct 482502 GACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCG 482443 Query 7978 GACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGC 8037 || | | | | || | ||||| ||| || || || || ||| Sbjct 482442 GATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGC 482383 Query 8038 GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCA 8097 ||||| ||| | | ||||| | |||||||| || |||| ||| || | |||| Sbjct 482382 GATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACGCT 482323 Query 8098 CAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAA 8157 | ||| | || ||||||||| | |||||| | | ||||| | Sbjct 482322 GACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGGAG 482263 Query 8158 TTTGAACAATTGTACAAACAATACGAACACGACGGC-GCGTACGTGCGGCAAGTGAAAGC 8216 ||||| ||||| || | ||||| || || ||| | | || ||| | | | || || Sbjct 482262 TTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGTCGA-TCAAGGC 482204 Query 8217 GCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCT 8276 | | ||| ||||||| | || || | ||| || || | |||| |||||| Sbjct 482203 CCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCATGCT 482144 Query 8277 GTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAG 8336 |||||| ||| |||||| ||| ||||| || | ||| |||| ||||| | || Sbjct 482143 GTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCCGCAGCTC 482084 Query 8337 CAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCT 8396 ||| |||||| |||| ||| | ||||| | ||||| || || || ||||| ||||| || Sbjct 482083 CAACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGAGGTTGCCGTGTGCAACCT 482024 Query 8397 AGCGTCGGTG 8406 || ||| || Sbjct 482023 GGCTTCGCTG 482014 >seq6 Length=1902109 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| ||||| || || || ||||| || ||||||||||| | Sbjct 700740 CCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAA 700681 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || ||||||| ||||||||| || || || Sbjct 700680 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 700621 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| || ||||| ||| | || || ||||| || || Sbjct 700620 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACT 700561 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 |||||||||||||| || ||||| | || || |||| Sbjct 700560 TCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGA 700524 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | ||| | || || ||||| ||||| || || | Sbjct 107617 CCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 107558 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||||| || || ||||| || || || || ||||| ||||| || Sbjct 107557 TCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGT 107498 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| ||||| || ||||| || | || || |||| Sbjct 107497 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGA 107438 Query 134704 AAATTTGCATTTTG 134717 |||| ||||| ||| Sbjct 107437 AAATCTGCATCTTG 107424 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || || || || || ||||| || |||||||||||| | Sbjct 700968 CCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 700909 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||| || ||||||| ||||||||| || || || Sbjct 700908 AGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGA 700849 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | || || || || ||||| Sbjct 700848 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCACC 700789 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || ||||| | ||| || || || || ||||| Sbjct 700788 TCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| || ||||| || ||||| ||||| || |||||||||||| || || || Sbjct 700446 AGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGA 700387 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| || || || ||||| | ||| ||||| || || || || || || Sbjct 700386 CCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGGAATACCCTCC 700327 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | |||||||| ||||| || || || || Sbjct 700326 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGACCTCTAGCGTG 700267 Query 134676 ATGGTTTTACCGGT 134689 ||||| || || || Sbjct 700266 ATGGTCTTGCCCGT 700253 >seq16 Length=638914 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| ||||||||||||||| | |||| | || || ||||| ||||| || || | Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || || || ||||| || || || || || || ||||| || Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 520813 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || || || |||||||| ||||| || | || || |||| Sbjct 520812 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 520753 Query 134704 AAATTTGC 134711 || | ||| Sbjct 520752 AACTGTGC 520745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398210475600