Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq19 125 1e-23 >seq19 Length=545716 Score = 125 bits (138), Expect = 1e-23 Identities = 424/658 (64%), Gaps = 2/658 (0%) Strand=Plus/Plus Query 69537 ATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAAC 69596 |||| ||| ||||| || || || || ||||||| | ||| || | | | || || Sbjct 482278 ATCAGCCAGGCCAGGGCACTCGTTGGGGCACATCAGGGTCCAGTCAGCGTTCTTCTCGAC 482337 Query 69597 TCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTC 69656 || ||||| || |||||||||||||| || || | || ||||| | || | | || Sbjct 482338 ACGCTTCATGAAGAGATCGGGAATCCACAGCGCCAGGAAAAGATCGCGGGCGCGAACCTC 482397 Query 69657 TTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 69716 || || || || || || || || ||||| | | ||| | ||||| || || Sbjct 482398 CTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAACACATCCGCGTGCCACGGCTC 482457 Query 69717 TAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGT 69776 || || || || | | | || || || || || || ||||| || | ||| | |||||| Sbjct 482458 CAGGTAAATGGCAAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGGGCAGT 482517 Query 69777 GTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAAT 69836 ||| || | || | |||||| ||||| ||||| || || |||| ||||| || | ||| Sbjct 482518 GTTGTTGAACACACGCAGCATGGGAATGATACCGTTGGAGGTACCGTTTGTGCCGGCAAT 482577 Query 69837 ATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGA 69896 || || | || ||||| | | ||||| || || || ||||| || || Sbjct 482578 GTACGAGCCAGTGGCACGAATGCGGTGGACATTGAGACCGATACCACCAGCCATCTTGGA 482637 Query 69897 GATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTT 69956 ||| | ||||||| || | || || || || ||||| || || || |||||| Sbjct 482638 GATCATAGCACAAGTCTTGAGAGTATCGTAAATGCCCTCGATCGAGTCTTCCTTCATGTC 482697 Query 69957 AAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGA 70016 || || || || |||| ||| || || ||||| || || | || || || Sbjct 482698 AACCAGGAAGCAAGAGGACAGCTGAGCCTGGGGCGTACCCGCGTTGAAAAGAGTGGGCGA 482757 Query 70017 TGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTA-TAT 70075 ||||| ||||| | || ||| | || ||||| || |||||| | || | | | Sbjct 482758 GGCGTGGGTGAAGAACTTGCTAGACATGAGGTTGTACGTCTCAATAACACGGTCAACTCT 482817 Query 70076 CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTT 70135 ||| ||| || | || |||||||| | ||| ||||| || || || || | | Sbjct 482818 GTCAC-CCCAAATGCCGACAGCAACACGCATAATCATGTGCTGGGGACGCTCGACAATCT 482876 Query 70136 TATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 | | | |||| |||||| || ||||| || || || ||||| || | ||| Sbjct 482877 TGCCGTCGAGCTTCAGCAGGTACGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGGTA 482934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908542409200