Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq19 104 7e-17
seq18 102 3e-16
>seq19
Length=545716
Score = 104 bits (114), Expect = 7e-17
Identities = 364/553 (66%), Gaps = 38/553 (7%)
Strand=Plus/Minus
Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030
||| || || || ||| | ||||||||||||||| || ||||||||||| || || ||
Sbjct 482551 CGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCGCTACGTCGACCAGGGTGG 482492
Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087
| ||| ||||| || || || |||| |||||||||||||||||||| || ||||
Sbjct 482491 CAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGATGTGTTTGA 482432
Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145
||| || || ||| | | || ||||| |||||| | ||||||||| |
Sbjct 482431 ---GTTCCTTGAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGATCTT 482377
Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GA 255200
| | || | ||| |||||| || || || ||||| ||||| || ||
Sbjct 482376 TTCCTGGCGCTGTGGATTCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACGCTGA 482321
Query 255201 CCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGT 255260
||||| ||| ||||| |||||| | || || || | || | | || || ||||
Sbjct 482320 -CTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGGAGT 482262
Query 255261 TTGAAAAACTGTATCTGGAGTACGAGC----GTGCCG-GCCGGTTCGTACGCCAAGTGCC 255315
|||| ||||| ||||||||| | |||| | | | ||| |||| |||
Sbjct 482261 TTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGTCGATCAAG-GCC 482203
Query 255316 CGCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCT 255375
| ||||| | ||| || | || || ||| || || || | |||||| |
Sbjct 482202 C----AGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCAT 482147
Query 255376 ATTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCG 255434
|| |||| |||||| || |||| | | ||||| ||| ||||| || |||
Sbjct 482146 GCTGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATCCGCA 482088
Query 255435 GCTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTT 255491
|||| ||||||||||| ||||||| ||| || | |||| | ||||| ||||| |
Sbjct 482087 GCTCCAACCTGTGCACTGAGATTA--TTGAGTAC-TGTGCGCCTGATGAGGTTGCCGTGT 482031
Query 255492 GCAACTTGGCGTC 255504
||||| |||| ||
Sbjct 482030 GCAACCTGGCTTC 482018
>seq18
Length=564976
Score = 102 bits (112), Expect = 3e-16
Identities = 126/171 (74%), Gaps = 1/171 (1%)
Strand=Plus/Plus
Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758
||| | | |||| || || || ||||| | ||||| || | || || ||| ||||
Sbjct 230203 CTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GCTT 230261
Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818
| |||||||| |||||| || |||||||| || |||| ||||||||||||| ||||
Sbjct 230262 TCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACG 230321
Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869
| ||||| || ||||||||| |||| |||||| ||||| || ||||
Sbjct 230322 AGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCT 230372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588335389483350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |