Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq19 104 7e-17 seq18 102 3e-16 >seq19 Length=545716 Score = 104 bits (114), Expect = 7e-17 Identities = 364/553 (66%), Gaps = 38/553 (7%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||| || || || ||| | ||||||||||||||| || ||||||||||| || || || Sbjct 482551 CGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCGCTACGTCGACCAGGGTGG 482492 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGA 255087 | ||| ||||| || || || |||| |||||||||||||||||||| || |||| Sbjct 482491 CAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGTGGCACGCGGATGTGTTTGA 482432 Query 255088 ACGGTT--TTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATC 255145 ||| || || ||| | | || ||||| |||||| | ||||||||| | Sbjct 482431 ---GTTCCTTGAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTTCGCGCCCGCGATCTT 482377 Query 255146 TACACCGCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA-----GA 255200 | | || | ||| |||||| || || || ||||| ||||| || || Sbjct 482376 TTCCTGGCGCTGTGGATTCCCGATCTCTTCAT--GAAGCGTG--TCGAGAAGAACGCTGA 482321 Query 255201 CCTGGAGCCTCATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGT 255260 ||||| ||| ||||| |||||| | || || || | || | | || || |||| Sbjct 482320 -CTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACGGCGAGGAGT 482262 Query 255261 TTGAAAAACTGTATCTGGAGTACGAGC----GTGCCG-GCCGGTTCGTACGCCAAGTGCC 255315 |||| ||||| ||||||||| | |||| | | | ||| |||| ||| Sbjct 482261 TTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGTCGATCAAG-GCC 482203 Query 255316 CGCGAAGAAGATCTGGAACACGATGGTGCGCATGCAGCTGGAAACCGGAATGCCGTTCCT 255375 | ||||| | ||| || | || || ||| || || || | |||||| | Sbjct 482202 C----AGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCCGTTCAT 482147 Query 255376 ATTGCACAAAGACCAC-ATAAACGCACGGTCGAACCAACGCCACCGCGGTACGATACGCG 255434 || |||| |||||| || |||| | | ||||| ||| ||||| || ||| Sbjct 482146 GCTGTACAAGGACCACTGCAACCGCAAGAGC-AACCAGAAGAACCTGGGTACCATCCGCA 482088 Query 255435 GCTCGAACCTGTGCACCGAGATTACGTTGCACACGTCAGCGC---AAGAGGTGGCCGTTT 255491 |||| ||||||||||| ||||||| ||| || | |||| | ||||| ||||| | Sbjct 482087 GCTCCAACCTGTGCACTGAGATTA--TTGAGTAC-TGTGCGCCTGATGAGGTTGCCGTGT 482031 Query 255492 GCAACTTGGCGTC 255504 ||||| |||| || Sbjct 482030 GCAACCTGGCTTC 482018 >seq18 Length=564976 Score = 102 bits (112), Expect = 3e-16 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||| | | |||| || || || ||||| | ||||| || | || || ||| |||| Sbjct 230203 CTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC-GCTT 230261 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | |||||||| |||||| || |||||||| || |||| ||||||||||||| |||| Sbjct 230262 TCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCAACG 230321 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 | ||||| || ||||||||| |||| |||||| ||||| || |||| Sbjct 230322 AGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTCT 230372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335389483350