Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq19 223 4e-53
seq18 104 3e-17
seq14 100 4e-16
>seq19
Length=545716
Score = 223 bits (246), Expect = 4e-53
Identities = 902/1400 (64%), Gaps = 41/1400 (3%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||| ||||| | ||||| || |||||||| || || || |||| || || | |||
Sbjct 481482 GGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGC 481541
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || || | || ||| ||| || | ||| |||| |||||| | |
Sbjct 481542 TGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTGCT 481601
Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884
||||||| ||||||| || | ||| || | || |||| ||||||| |||||
Sbjct 481602 CCTTGAGCGACGCCCAGTCCCAGAGGTCGCTGGGCGTGACATTCC-ACATGTCGAACTGC 481660
Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944
|| | || || || |||| ||||||||| | || |||| ||| | | | ||
Sbjct 481661 AGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCA 481720
Query 110945 AATTCACAGCTCG-CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003
| ||| || | | || ||||| ||||| || |||||||||||||| ||| || |
Sbjct 481721 ATTTC-CATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAG 481779
Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058
|| || || | || |||| ||||| |||| | | || |||| ||
Sbjct 481780 CTTGCGAGCCTCGGCAGACTCAAAAGGCATGCGCAGCGCC-----AGGAAGGCATCAGCC 481834
Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118
||||| |||||||| | |||||| || | ||| ||||| || || | | | | ||||
Sbjct 481835 AGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT--GCTGTTGTG-GGCCTCA 481891
Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175
||||| || || |||||||| ||||| || || ||||| ||| |||
Sbjct 481892 GGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTG 481951
Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235
| || || || || | | || | | | | | | |||| || || ||
Sbjct 481952 ACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGA 482011
Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295
|| | || |||| ||||| || || |||||| | |||||| | ||| ||
Sbjct 482012 GCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAGTACTCAATAATCTCA 482071
Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355
|| || | |||||| || || || |||| ||||| ||||| ||||| ||||||
Sbjct 482072 GTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 482131
Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415
|||||||| |||||| | || | || ||||| ||||| | | ||||| || | |
Sbjct 482132 TGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATGGCGTAC 482191
Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474
|| | | || | | || | | | ||| | | || ||||| |||||||||| |||
Sbjct 482192 CACAGCTTCTGGGCCTTGATCGA-CGCGCGGCCACGGCCCTCTTGCTCGTACTTTTCGTA 482250
Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534
||||| ||||||||||| || || | || || || || || || || |
Sbjct 482251 CAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACAT 482310
Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG- 111593
|| | ||| | | | | ||| || ||||||||||| || || ||||||||||| |
Sbjct 482311 CAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGC 482370
Query 111594 -ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652
| |||| ||||| | ||| |||| || | || ||||| || | ||||||
Sbjct 482371 CAGGAAA--AGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGG 482428
Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCG 111708
||||| | | |||||||||||| ||||| || || | || | | || | | |
Sbjct 482429 AACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTG 482488
Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768
| ||| | || | || ||||| || ||| ||| || || || ||||| ||||| ||
Sbjct 482489 TTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGAT 482547
Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGG 111826
||| | || ||| ||||| || || |||||| | |||| | | |||
Sbjct 482548 ACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAG--CCAGTGGCACGAATGCGGTGG 482605
Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886
| | | || ||||| |||||| ||| ||||| ||||| | | ||||| |
Sbjct 482606 ACATTGAGACCGATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCG 482665
Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946
|| || || | ||| ||||| ||||| || | | ||||||||| ||||| ||| |
Sbjct 482666 TAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCC 482725
Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004
|| ||||| || ||||| || || || | ||||| ||| | | |||| ||||
Sbjct 482726 TGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGA--AGAACTTGCTAGACA 482783
Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGATTGCGACC 112063
| || ||| ||||| | ||| |||| ||| || || ||||||| || ||
Sbjct 482784 TGAGGTTGTACGTCTCAATAACACGGTCAA-CTCTGTCACCCCAAATGCCGACAGCAACA 482842
Query 112064 CGCATGAACATGTACTGTGG 112083
||||| | ||||| ||| ||
Sbjct 482843 CGCATAATCATGTGCTGGGG 482862
>seq18
Length=564976
Score = 104 bits (114), Expect = 3e-17
Identities = 524/821 (64%), Gaps = 33/821 (4%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| || || |||||||| |||||||||||||| || | || ||||| |||||
Sbjct 230649 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATG 230590
Query 122431 AAGTCAAATGGATTCTTCG--CGTT---CCAAATGGGTGGCACCC-CAACTTGTTTGAGG 122484
|||||||| || ||| | | || | || | | || || |||| ||
Sbjct 230589 AAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGGGCAACC------AGC 230536
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
||||| || | ||| |||||||||||| ||| || | |||||| || | |||
Sbjct 230535 AGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGG 230476
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
|| || || || || | |||| | |||||||| |||| || || | | |||
Sbjct 230475 GCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATGATC 230416
Query 122605 GCGTGGATA-GTTTC--GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661
| | | | | ||| | ||| | | | || || | ||||||| ||||
Sbjct 230415 TCCTCAACAAGCTTCTTGCTAGGGCGGGTGTT---CAGGTGCGAGAAGAGCAGGCAGGCA 230359
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| |||||||| || || ||||| || || || || ||| ||||| |||
Sbjct 230358 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGC 230299
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781
|| ||||| ||||| || ||| |||| | | ||| | || |||||||||||||||
Sbjct 230298 ATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCC 230239
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCA 122840
|| || ||||| || | || || | ||| |||| ||| | | | || |||
Sbjct 230238 TCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGG-TCGACTCGCGGTCGGAAATCCA 230180
Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAA 122896
|| | ||||| | ||||| ||| || || | || | |||||| | ||
Sbjct 230179 CTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAG 230120
Query 122897 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956
|| |||| || ||| ||||| ||||| |||| || | || || || |
Sbjct 230119 GTAGCTGC-GCTGGGCAG---GCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCT 230064
Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015
| || | | | ||| ||| | || | ||||||| |||| || ||| |||
Sbjct 230063 CCGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005
Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075
|| |||||| ||| ||| | | ||||| ||||| || || || ||||
Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945
Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAG 123132
||||| ||||||| || | ||||| | |||||| | | |||| || | ||||||
Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885
Query 123133 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
|||| |||||| ||||||| ||||| || || || |||||
Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCA 229844
>seq14
Length=642483
Score = 100 bits (110), Expect = 4e-16
Identities = 205/301 (68%), Gaps = 4/301 (1%)
Strand=Plus/Minus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
||||||||||| || || |||| || || || ||| | || || | |||| |
Sbjct 232922 GCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGCGCCGTGGCAAACAAG 232863
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG--GCAGAGC 11747
||||| || | | | ||||||||| ||||||||||| ||||| | | | || || |
Sbjct 232862 TCGCGCACACGTGACGGACCCACACCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 232804
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
||| | ||| || || || || ||||| |||| ||| || || ||||||||||
Sbjct 232803 GCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 232745
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867
|||| || ||||| |||| ||||| || ||||||||||| || | | | |
Sbjct 232744 TACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGGCGCCCAGGCGCACAAACT 232685
Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927
| ||||| | |||||| || | ||||| ||| || || | |||||| |||| || |
Sbjct 232684 TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATGC 232625
Query 11928 C 11928
|
Sbjct 232624 C 232624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031764488000
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