Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq19 223 4e-53 seq18 104 3e-17 seq14 100 4e-16 >seq19 Length=545716 Score = 223 bits (246), Expect = 4e-53 Identities = 902/1400 (64%), Gaps = 41/1400 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || |||||||| || || || |||| || || | ||| Sbjct 481482 GGTAAATGTTGGAAGTGTACGGCTCAAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGC 481541 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | || ||| ||| || | ||| |||| |||||| | | Sbjct 481542 TGGCCGTCGGCATCGGCGCAAGCAGAAGCGAGTTGCGCACACCGTTCTGCTTGATCTGCT 481601 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||||||| ||||||| || | ||| || | || |||| ||||||| ||||| Sbjct 481602 CCTTGAGCGACGCCCAGTCCCAGAGGTCGCTGGGCGTGACATTCC-ACATGTCGAACTGC 481660 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || || || |||| ||||||||| | || |||| ||| | | | || Sbjct 481661 AGGATGCCCTGAGAAACGGGCGAACCCTCATACGTAGAGTAGGTACCCTCCTCCTTGGCA 481720 Query 110945 AATTCACAGCTCG-CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||| || | | || ||||| ||||| || |||||||||||||| ||| || | Sbjct 481721 ATTTC-CATCGAGGCCGTCAGGGCAGCGTGGTAGATGGTTTCAAAGATCTGAGTGTTGAG 481779 Query 111004 CTCCTTGGCTTCATCTGAATCAA-----ATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || || || | || |||| ||||| |||| | | || |||| || Sbjct 481780 CTTGCGAGCCTCGGCAGACTCAAAAGGCATGCGCAGCGCC-----AGGAAGGCATCAGCC 481834 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | |||||| || | ||| ||||| || || | | | | |||| Sbjct 481835 AGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT--GCTGTTGTG-GGCCTCA 481891 Query 111119 ---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 ||||| || || |||||||| ||||| || || ||||| ||| ||| Sbjct 481892 GGCACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAGGTTGCGCACAACAACCTTGGTG 481951 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | || || || || | | || | | | | | | |||| || || || Sbjct 481952 ACCTCGTGCAGCTTCTGGAAGTCGTACTCGTTCTTGTTGTAGTCGACAAACGACGGCAGA 482011 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | || |||| ||||| || || |||||| | |||||| | ||| || Sbjct 482012 GCCAGCGAAGCCAGGTTGCACACGGCAACCTCATCAGGCGCACAGTACTCAATAATCTCA 482071 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | |||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 482072 GTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 482131 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 |||||||| |||||| | || | || ||||| ||||| | | ||||| || | | Sbjct 482132 TGGTCCTTGTACAGCATGAACGGGTTGCCTGTCTCGGTCTGGGCCTCCAGAATGGCGTAC 482191 Query 111416 CA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || | | || | | || | | | ||| | | || ||||| |||||||||| ||| Sbjct 482192 CACAGCTTCTGGGCCTTGATCGA-CGCGCGGCCACGGCCCTCTTGCTCGTACTTTTCGTA 482250 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAA 111534 ||||| ||||||||||| || || | || || || || || || || | Sbjct 482251 CAGGGCCTCAAACTCCTCGCCGTAGCAATCAGCCAGGCCAGGGCACTCGTTGGGGCACAT 482310 Query 111535 AAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG- 111593 || | ||| | | | | ||| || ||||||||||| || || ||||||||||| | Sbjct 482311 CAGGGTCCAGTCAGCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGCGC 482370 Query 111594 -ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGG 111652 | |||| ||||| | ||| |||| || | || ||||| || | |||||| Sbjct 482371 CAGGAAA--AGATCGCGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGG 482428 Query 111653 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCG 111708 ||||| | | |||||||||||| ||||| || || | || | | || | | | Sbjct 482429 AACTCAAACACATCCGCGTGCCACGGCTCCAGGTAAATGGCAAAGGCACCAGGGCGCTTG 482488 Query 111709 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 111768 | ||| | || | || ||||| || ||| ||| || || || ||||| ||||| || Sbjct 482489 TTG-CCACCCTGGTCGACGTAGCGGGCAGTGTTGTTGAACACACGCAGCATGGGAATGAT 482547 Query 111769 ACCATCTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGG 111826 ||| | || ||| ||||| || || |||||| | |||| | | ||| Sbjct 482548 ACCGTTGGAGGTACCGTTTGTGCCGGCAATGTACGAG--CCAGTGGCACGAATGCGGTGG 482605 Query 111827 ATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCA 111886 | | | || ||||| |||||| ||| ||||| ||||| | | ||||| | Sbjct 482606 ACATTGAGACCGATACCACCAGCCATCTTGGAGATCATAGCACAAGTCTTGAGAGTATCG 482665 Query 111887 TAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGT 111946 || || || | ||| ||||| ||||| || | | ||||||||| ||||| ||| | Sbjct 482666 TAAATGCCCTCGATCGAGTCTTCCTTCATGTCAACCAGGAAGCAAGAGGACAGCTGAGCC 482725 Query 111947 CTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACA 112004 || ||||| || ||||| || || || | ||||| ||| | | |||| |||| Sbjct 482726 TGGGGCGTACCCGCGTTGAAAAGAGTGGGCGAGGCGTGGGTGA--AGAACTTGCTAGACA 482783 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCT-TCCCCGTGGATGCCGATTGCGACC 112063 | || ||| ||||| | ||| |||| ||| || || ||||||| || || Sbjct 482784 TGAGGTTGTACGTCTCAATAACACGGTCAA-CTCTGTCACCCCAAATGCCGACAGCAACA 482842 Query 112064 CGCATGAACATGTACTGTGG 112083 ||||| | ||||| ||| || Sbjct 482843 CGCATAATCATGTGCTGGGG 482862 >seq18 Length=564976 Score = 104 bits (114), Expect = 3e-17 Identities = 524/821 (64%), Gaps = 33/821 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || || |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 230649 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATG 230590 Query 122431 AAGTCAAATGGATTCTTCG--CGTT---CCAAATGGGTGGCACCC-CAACTTGTTTGAGG 122484 |||||||| || ||| | | || | || | | || || |||| || Sbjct 230589 AAGTCAAAGGGGTTCGTGGAGCGGTAGACCTTCTCGTTGCCAAGGGCAACC------AGC 230536 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 ||||| || | ||| |||||||||||| ||| || | |||||| || | ||| Sbjct 230535 AGACGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGG 230476 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 || || || || || | |||| | |||||||| |||| || || | | ||| Sbjct 230475 GCGCAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAATGACAACGGCATCGGTGATGATC 230416 Query 122605 GCGTGGATA-GTTTC--GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | | | | | ||| | ||| | | | || || | ||||||| |||| Sbjct 230415 TCCTCAACAAGCTTCTTGCTAGGGCGGGTGTT---CAGGTGCGAGAAGAGCAGGCAGGCA 230359 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| |||||||| || || ||||| || || || || ||| ||||| ||| Sbjct 230358 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGC 230299 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 || ||||| ||||| || ||| |||| | | ||| | || ||||||||||||||| Sbjct 230298 ATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCC 230239 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCA 122840 || || ||||| || | || || | ||| |||| ||| | | | || ||| Sbjct 230238 TCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAAGG-TCGACTCGCGGTCGGAAATCCA 230180 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTT----CAA 122896 || | ||||| | ||||| ||| || || | || | |||||| | || Sbjct 230179 CTTGAGAGCCCAGTCGGCCTTGCGGCGAATGCAAGGAATGGTGTCGATGGCGTTGAACAG 230120 Query 122897 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 122956 || |||| || ||| ||||| ||||| |||| || | || || || | Sbjct 230119 GTAGCTGC-GCTGGGCAG---GCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGTCT 230064 Query 122957 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 123015 | || | | | ||| ||| | || | ||||||| |||| || ||| ||| Sbjct 230063 CCGAGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGGGCCTCGGGGATC 230005 Query 123016 TGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 123075 || |||||| ||| ||| | | ||||| ||||| || || || |||| Sbjct 230004 TGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGCG 229945 Query 123076 AAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAG 123132 ||||| ||||||| || | ||||| | |||||| | | |||| || | |||||| Sbjct 229944 AAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCAG 229885 Query 123133 TCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 |||| |||||| ||||||| ||||| || || || ||||| Sbjct 229884 TCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCA 229844 >seq14 Length=642483 Score = 100 bits (110), Expect = 4e-16 Identities = 205/301 (68%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| || || |||| || || || ||| | || || | |||| | Sbjct 232922 GCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGCGCCGTGGCAAACAAG 232863 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG--GCAGAGC 11747 ||||| || | | | ||||||||| ||||||||||| ||||| | | | || || | Sbjct 232862 TCGCGCACACGTGACGGACCCACACCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 232804 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| | ||| || || || || ||||| |||| ||| || || |||||||||| Sbjct 232803 GCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAGCAGCGTCTTTCCCG 232745 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATC 11867 |||| || ||||| |||| ||||| || ||||||||||| || | | | | Sbjct 232744 TACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGGCGCCCAGGCGCACAAACT 232685 Query 11868 TCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCC 11927 | ||||| | |||||| || | ||||| ||| || || | |||||| |||| || | Sbjct 232684 TTTCGGGCTTCTTGAGGAACTGCACAAACTCCATAATCTCCACCTTGGCCTCGTCCATGC 232625 Query 11928 C 11928 | Sbjct 232624 C 232624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031764488000