Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq19 244 1e-59
seq18 107 2e-18
seq14 89.7 6e-13
>seq19
Length=545716
Score = 244 bits (270), Expect = 1e-59
Identities = 908/1400 (65%), Gaps = 45/1400 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278
|| ||| ||||| | ||||| || || |||| ||| ||||| |||| |||| |
Sbjct 482862 CCCCAGCACATGATTATGCGTGTTGCTGTCGGCATT--TGGGGT-GACAGAGTTGACCGT 482806
Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336
|| | ||||| ||| || ||||| |||| | | ||| ||||| | || || |
Sbjct 482805 GTTATTGAGACGTACAACCTCATGTCTAGCAAGTTCT--TCACCCACGCCTCGCCCACTC 482748
Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396
| ||||| || ||||| || | || ||||| ||||||||| | | || ||||
Sbjct 482747 TTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATGAAGG 482688
Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456
| ||||| ||| | || || || | ||||| | | ||||| ||||| ||| ||
Sbjct 482687 AAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGATCTCCAAGATGG 482628
Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGG 104514
|||| ||||| || | | |||| | | |||| | |||||| || ||
Sbjct 482627 CTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGG--CTCGTACATTGCCGG 482570
Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574
||||| ||| || | ||||| ||||| ||||| || || || ||| ||| || ||
Sbjct 482569 CACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCG 482510
Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCAT 104630
||| || | || | ||| | | | | || | | || | || || ||||| |
Sbjct 482509 CTACGTCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGT 482451
Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690
||||||||||| | | ||||||||||| |||| ||||| || | ||||||| |
Sbjct 482450 GGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTC 482391
Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750
| ||||||||| ||| || || |||||||| ||||||||||||||| | || |||
Sbjct 482390 GCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGA 482331
Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810
||| | | ||| | || | || || || || ||||| || | ||| | |
Sbjct 482330 AGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACG 482271
Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACG 104869
| ||||||||||| ||||| ||| |||||||||| |||| || || ||| | ||| ||
Sbjct 482270 GCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGC-GCGTCG 482212
Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
| | || | || | ||||| | || ||||| || | || |||||||| || | ||
Sbjct 482211 AT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCC 482153
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| |||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| ||
Sbjct 482152 GTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCAT 482093
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || ||||| || || || || || | || | | |||||| || ||
Sbjct 482092 CCGCAGCTCCAACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGAGGTTGCCGT 482033
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107
||| ||||| || || | ||||| || || ||| || | || | || || | |
Sbjct 482032 GTGCAACCTGGCTTCGCTGGCTCTGCCGTCGTTTGTCGACTACAACAAGAACGA-GTACG 481974
Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167
| | | || || ||||| || || || ||| ||||| ||| | | ||||
Sbjct 481973 ACTTCCAGAAGCTGCACGAGGTCACCAAGGTTGTTGTGCGCAACCTGAACCGCATCATTG 481914
Query 105168 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224
| || |||||||| |||| || | || || ||| | |||||||| |
Sbjct 481913 ACGTCAACCACTACCCCGTGCCTGAG---GCCCACAACAGCAACATGCGTCACCGTCCCA 481857
Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TT 105279
||||| | |||||||||||||| || |||| ||| || ||| |||| ||
Sbjct 481856 TTGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTC-----CTGGCGCTGCGCATGCCTTT 481802
Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339
||| || | ||| || | |||| | | || ||||| ||||| || ||||| ||
Sbjct 481801 TGAGTCTGCCGAGGCTCGCAAGCTCAACACTCAGATCTTTGAAACCATCTACCACGCTGC 481742
Query 105340 TCTTGAGG-CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398
|| || | | | | ||| || ||| || ||| | || || | ||||||||
Sbjct 481741 CCTGACGGCCTCGATGGAAATTGCCA-AGGAGGAGGGTACCTACTCTACGTATGAGGGTT 481683
Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCAC 105457
| || | ||| || || | || || || || |||| |||| || | || ||| | |
Sbjct 481682 CGCCCGTTTCTCAGGGCATCCTGCAGTTCGACATGT-GGAATGTCACGCCCAGCGACCTC 481624
Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517
| ||||||| | |||||||| | |||||| |||| ||| | || ||| || ||
Sbjct 481623 TGGGACTGGGCGTCGCTCAAGGAGCAGATCAAGCAGAACGGTGTGCGCAACTCGCTTCTG 481564
Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577
| || || ||||| || ||| ||| | || || |||| || || || ||||||||
Sbjct 481563 CTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTTGAG 481504
Query 105578 CCCTACACGACGAACATCTA 105597
|| ||||| | ||||| ||
Sbjct 481503 CCGTACACTTCCAACATTTA 481484
>seq18
Length=564976
Score = 107 bits (118), Expect = 2e-18
Identities = 344/523 (66%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || || ||| | ||||| || |||||| | |||| ||||| | | | ||
Sbjct 229844 TGGACGGCCGAGGAGATTGATCTGTCCAAGGATCTTCACGACTGGAACAACCGCATGAAC 229903
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
| | |||||| | ||||| || ||||||| ||||| |||| || || || |||
Sbjct 229904 AAGGACGAAAAGTACTTCATCTCGCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATT 229963
Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616
|| ||||| | | || | | |||||| || |||| | || || | |
Sbjct 229964 GTCAACGAGAACTTGGTCGAGCGTTTCTCGGGTGAGGTCCAGATCCCC-GAGGCCCGCTG 230022
Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675
|||||| | | ||| |||| ||| | | | || |||||| ||| ||||
Sbjct 230023 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCA 230081
Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734
| |||| || || ||||| ||| || | ||| | || || | |||||| | ||
Sbjct 230082 TCGACACCTACATCAAGGAGCCTGCCCAGC-GCAGCTACCTGTTCAACGCCATCGACACC 230140
Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794
|||| || |||| || || || |||||| | |||||| || | | | || ||
Sbjct 230141 ATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATT--TCCGACCGCGAGT 230198
Query 94795 T--CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852
||||||| |||| || | || ||||| || ||||||||||||||||| ||
Sbjct 230199 CGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCG 230258
Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912
| ||| | | |||| ||||| ||||| ||||| ||||| ||||| ||| ||||
Sbjct 230259 CTTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCA 230318
Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
||||||| || || ||||||||||| || ||| || |||||
Sbjct 230319 ACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGC 230361
>seq14
Length=642483
Score = 89.7 bits (98), Expect = 6e-13
Identities = 276/416 (66%), Gaps = 16/416 (4%)
Strand=Plus/Minus
Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582
||||||||| ||||| ||||| | ||||| | || |||||||| | || ||||| |
Sbjct 233109 ACGATCAAAACGACCCGGACGCATCAGCGCCTTGTCCAGGATATCCGCACGGTTCGTGCC 233050
Query 9583 GGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640
||| | || ||||| ||||| | | | || |||||||| || |||| | |||
Sbjct 233049 GGCCAGCACGACAAT--CTGTTCGGCCGTGTTGAAGCCATCCATTTCCGTCAGGATCTGG 232992
Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCA--CCAG-CACTGCGTTGC 9694
|| | || || || || || || ||| | | || | | || | | || |
Sbjct 232991 TTGAGCGTGGACTCGCGCTCGTCGTTGCCGCCGCCCATGCGGTTCGAGTCGGTACGCGAC 232932
Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754
|| | |||||||||||| || || |||| |||||| || ||| | || ||
Sbjct 232931 CGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGCGCCGTG 232872
Query 9755 TCAAAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTG 9812
|||| | || || ||||| || || |||||||| ||||||||||| ||||| | |
Sbjct 232871 GCAAACAAGTCGCGCACACG--TGACGGACCCACACCGACAAACATCTCGACAAACTCGG 232814
Query 9813 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871
| || || || | ||| || || || || ||||| |||| ||| || ||
Sbjct 232813 AGCCGCTGACGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAGCAGC 232755
Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
||||| |||||||| || ||||| || | || || ||||| |||||||||||
Sbjct 232754 GTCTTTCCCGTACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGGCGCC 232699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260581277200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |