Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq19 244 1e-59 seq18 107 2e-18 seq14 89.7 6e-13 >seq19 Length=545716 Score = 244 bits (270), Expect = 1e-59 Identities = 908/1400 (65%), Gaps = 45/1400 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| | ||||| || || |||| ||| ||||| |||| |||| | Sbjct 482862 CCCCAGCACATGATTATGCGTGTTGCTGTCGGCATT--TGGGGT-GACAGAGTTGACCGT 482806 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 || | ||||| ||| || ||||| |||| | | ||| ||||| | || || | Sbjct 482805 GTTATTGAGACGTACAACCTCATGTCTAGCAAGTTCT--TCACCCACGCCTCGCCCACTC 482748 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 | ||||| || ||||| || | || ||||| ||||||||| | | || |||| Sbjct 482747 TTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATGAAGG 482688 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 | ||||| ||| | || || || | ||||| | | ||||| ||||| ||| || Sbjct 482687 AAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGATCTCCAAGATGG 482628 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGG 104514 |||| ||||| || | | |||| | | |||| | |||||| || || Sbjct 482627 CTGGTGGTATCGGTCTCAATGTCCACCGCATTCGTGCCACTGG--CTCGTACATTGCCGG 482570 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 ||||| ||| || | ||||| ||||| ||||| || || || ||| ||| || || Sbjct 482569 CACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTGCCCG 482510 Query 104575 CTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCAT 104630 ||| || | || | ||| | | | | || | | || | || || ||||| | Sbjct 482509 CTACGTCGACCAGGGTGG-CAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGCCGT 482451 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||||||||| | | ||||||||||| |||| ||||| || | ||||||| | Sbjct 482450 GGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTC 482391 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | ||||||||| ||| || || |||||||| ||||||||||||||| | || ||| Sbjct 482390 GCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGA 482331 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| | | ||| | || | || || || || ||||| || | ||| | | Sbjct 482330 AGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCTACG 482271 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCGACG 104869 | ||||||||||| ||||| ||| |||||||||| |||| || || ||| | ||| || Sbjct 482270 GCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGC-GCGTCG 482212 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | ||||| | || ||||| || | || |||||||| || | || Sbjct 482211 AT-CAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACCC 482153 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||||| ||||| ||| ||| |||| ||||| || || ||||| ||||| || Sbjct 482152 GTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCAT 482093 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| || || || || || | || | | |||||| || || Sbjct 482092 CCGCAGCTCCAACCTGTGCACTGAGATTATTGAGTACTGTGCGCCTGATGAGGTTGCCGT 482033 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 ||| ||||| || || | ||||| || || ||| || | || | || || | | Sbjct 482032 GTGCAACCTGGCTTCGCTGGCTCTGCCGTCGTTTGTCGACTACAACAAGAACGA-GTACG 481974 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| || || || ||| ||||| ||| | | |||| Sbjct 481973 ACTTCCAGAAGCTGCACGAGGTCACCAAGGTTGTTGTGCGCAACCTGAACCGCATCATTG 481914 Query 105168 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | || |||||||| |||| || | || || ||| | |||||||| | Sbjct 481913 ACGTCAACCACTACCCCGTGCCTGAG---GCCCACAACAGCAACATGCGTCACCGTCCCA 481857 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCA-----TT 105279 ||||| | |||||||||||||| || |||| ||| || ||| |||| || Sbjct 481856 TTGGTGTTGGTGTTCAGGGTCTGGCTGATGCCTTC-----CTGGCGCTGCGCATGCCTTT 481802 Query 105280 TGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGC 105339 ||| || | ||| || | |||| | | || ||||| ||||| || ||||| || Sbjct 481801 TGAGTCTGCCGAGGCTCGCAAGCTCAACACTCAGATCTTTGAAACCATCTACCACGCTGC 481742 Query 105340 TCTTGAGG-CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 105398 || || | | | | ||| || ||| || ||| | || || | |||||||| Sbjct 481741 CCTGACGGCCTCGATGGAAATTGCCA-AGGAGGAGGGTACCTACTCTACGTATGAGGGTT 481683 Query 105399 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCAC 105457 | || | ||| || || | || || || || |||| |||| || | || ||| | | Sbjct 481682 CGCCCGTTTCTCAGGGCATCCTGCAGTTCGACATGT-GGAATGTCACGCCCAGCGACCTC 481624 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | ||||||| | |||||||| | |||||| |||| ||| | || ||| || || Sbjct 481623 TGGGACTGGGCGTCGCTCAAGGAGCAGATCAAGCAGAACGGTGTGCGCAACTCGCTTCTG 481564 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | || || ||||| || ||| ||| | || || |||| || || || |||||||| Sbjct 481563 CTTGCGCCGATGCCGACGGCCAGCACGTCGCAGATTCTGGGCAACAACGAGTGCTTTGAG 481504 Query 105578 CCCTACACGACGAACATCTA 105597 || ||||| | ||||| || Sbjct 481503 CCGTACACTTCCAACATTTA 481484 >seq18 Length=564976 Score = 107 bits (118), Expect = 2e-18 Identities = 344/523 (66%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || || ||| | ||||| || |||||| | |||| ||||| | | | || Sbjct 229844 TGGACGGCCGAGGAGATTGATCTGTCCAAGGATCTTCACGACTGGAACAACCGCATGAAC 229903 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | |||||| | ||||| || ||||||| ||||| |||| || || || ||| Sbjct 229904 AAGGACGAAAAGTACTTCATCTCGCACGTCCTGGCCTTCTTCGCTGCTTCGGACGGCATT 229963 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 94616 || ||||| | | || | | |||||| || |||| | || || | | Sbjct 229964 GTCAACGAGAACTTGGTCGAGCGTTTCTCGGGTGAGGTCCAGATCCCC-GAGGCCCGCTG 230022 Query 94617 CTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 94675 |||||| | | ||| |||| ||| | | | || |||||| ||| |||| Sbjct 230023 CTTCTACGGCTTCCAGA-TCATGATGGAGAACATCCACTCGGAGACGTACTCGCTGCTCA 230081 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 94734 | |||| || || ||||| ||| || | ||| | || || | |||||| | || Sbjct 230082 TCGACACCTACATCAAGGAGCCTGCCCAGC-GCAGCTACCTGTTCAACGCCATCGACACC 230140 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 94794 |||| || |||| || || || |||||| | |||||| || | | | || || Sbjct 230141 ATTCCTTGCATTCGCCGCAAGGCCGACTGGGCTCTCAAGTGGATT--TCCGACCGCGAGT 230198 Query 94795 T--CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 ||||||| |||| || | || ||||| || ||||||||||||||||| || Sbjct 230199 CGACCTTTGCCCAGCGTCTGGTGGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCG 230258 Query 94853 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 | ||| | | |||| ||||| ||||| ||||| ||||| ||||| ||| |||| Sbjct 230259 CTTTCGCCTCCATTTTCTGGCTGCGCAAGCGTGGTCTGATGCCCGGTCTGACCTTTTCCA 230318 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| || || ||||||||||| || ||| || ||||| Sbjct 230319 ACGAGCTGATTTCGCGTGACGAGGGTCTGCACACCGACTTTGC 230361 >seq14 Length=642483 Score = 89.7 bits (98), Expect = 6e-13 Identities = 276/416 (66%), Gaps = 16/416 (4%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| ||||| ||||| | ||||| | || |||||||| | || ||||| | Sbjct 233109 ACGATCAAAACGACCCGGACGCATCAGCGCCTTGTCCAGGATATCCGCACGGTTCGTGCC 233050 Query 9583 GGCGATGACAACAATACCTGTTT--CATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 ||| | || ||||| ||||| | | | || |||||||| || |||| | ||| Sbjct 233049 GGCCAGCACGACAAT--CTGTTCGGCCGTGTTGAAGCCATCCATTTCCGTCAGGATCTGG 232992 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCA--CCAG-CACTGCGTTGC 9694 || | || || || || || || ||| | | || | | || | | || | Sbjct 232991 TTGAGCGTGGACTCGCGCTCGTCGTTGCCGCCGCCCATGCGGTTCGAGTCGGTACGCGAC 232932 Query 9695 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 9754 || | |||||||||||| || || |||| |||||| || ||| | || || Sbjct 232931 CGGCCAATGGCATCAATCTCGTCGATAAAGATGATGCACGGCGCATTCTTACGCGCCGTG 232872 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTG 9812 |||| | || || ||||| || || |||||||| ||||||||||| ||||| | | Sbjct 232871 GCAAACAAGTCGCGCACACG--TGACGGACCCACACCGACAAACATCTCGACAAACTCGG 232814 Query 9813 CGGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | || || || | ||| || || || || ||||| |||| ||| || || Sbjct 232813 AGCCGCTGACGCTGAA-GAACGGCACGCCCGACTCGCCCGCCGTGGCCTTGGCCAGCAGC 232755 Query 9872 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| |||||||| || ||||| || | || || ||||| ||||||||||| Sbjct 232754 GTCTTTCCCGTACCGGGGGGACCCGACAGAATAGCGCCGCGTGGGATCTTGGCGCC 232699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260581277200