Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq6 159 1e-33
seq5 107 6e-18
seq10 102 2e-16
>seq6
Length=1902109
Score = 159 bits (176), Expect = 1e-33
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| ||||| ||||||||||| || || || || || ||
Sbjct 700972 CATACCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 700913
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct 700912 GGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGG 700853
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || ||||| ||||| | ||| |||| ||
Sbjct 700852 AGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTC 700793
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||||||||| || || || ||||| ||||||||
Sbjct 700792 CACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 154 bits (170), Expect = 4e-32
Identities = 175/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||||| |||||||| | | ||||| ||||| ||||| ||||| || || || || |
Sbjct 701204 TTTACTGGCCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGT 701145
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || ||||| || || || || ||||||||||| ||||| ||||| |
Sbjct 701144 AATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGT 701085
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| |||||||| || || || |||||||| || | || ||||| ||||||| || || |
Sbjct 701084 CCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACG 701025
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| || || || || | ||||| || || || || || ||||| ||||||||
Sbjct 701024 ATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || |||||||| || || || || || ||
Sbjct 700744 CATACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 700685
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || ||||| ||||| || || || || || || ||||| ||||| || ||
Sbjct 700684 AGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGG 700625
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || | || || || || || | ||| || | ||
Sbjct 700624 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTC 700565
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||||| || |||| ||||| ||||| || || || ||
Sbjct 700564 GACTTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 700526
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|| || || || || || || | || || ||||| || || || || ||||| |||||
Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556
Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669
|| || |||||||| || ||||| || || || ||||| ||||| | || ||||| ||
Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496
Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729
|| | || || | ||||| || || |||| ||||| || || || || || || |||
Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436
Query 140730 ATCTGCAT 140737
||||||||
Sbjct 107435 ATCTGCAT 107428
Score = 100 bits (110), Expect = 9e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 700459 CATACCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 700400
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || || ||||| || || ||||||||||| || ||
Sbjct 700399 GGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGG 700340
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || || || || || | || || | |||
Sbjct 700339 AGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 700280
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|| || || || | ||||| || || | |||
Sbjct 700279 GACCTCTAGCGTGATGGTCTTGCCCGTCACTGT 700247
>seq5
Length=2148850
Score = 107 bits (118), Expect = 6e-18
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| |||||||| | ||||| ||| || || | |||||||||||||||||| || ||
Sbjct 305648 CGAGGCACACCCAGGGTAACGTTC---TTGGAAGAAACACCAGCAAAGTGGAAGGTGTTG 305592
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||||| |||||||||||| || ||||| |||| ||| || ||||| ||
Sbjct 305591 AGCGTCATCTGAGTAGCGGGCTCACCAATCGATTGCGCAGCAAGAACACCGACCATCTCA 305532
Query 377578 CCAGGATTGA 377587
||||| ||||
Sbjct 305531 CCAGGGTTGA 305522
>seq10
Length=914541
Score = 102 bits (112), Expect = 2e-16
Identities = 187/274 (68%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
||||||| | ||||| || || || || || ||| | |||||| || || || || |
Sbjct 251244 ATGCTGTCGTCACTGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCCACCAAGGACG 251303
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
| || ||||| || | || ||||| | || || || || |||||||| || || |
Sbjct 251304 CCGGTCTTATTGCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCCGCTGCCA 251363
Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787
|||| || || ||||| || | | || || || | || || || ||| | |
Sbjct 251364 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGG 251423
Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847
||||||||||||| ||||| || || || || |||| || || || || || || ||
Sbjct 251424 GTGGTGGTACTTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGT 251483
Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881
| || |||||||| || || || ||||| || ||
Sbjct 251484 CCACCGCTGGTGACACCCACCTGGGTGGTGAGGA 251517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253817574090
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |