Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 159 1e-33 seq5 107 6e-18 seq10 102 2e-16 >seq6 Length=1902109 Score = 159 bits (176), Expect = 1e-33 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| ||||| ||||||||||| || || || || || || Sbjct 700972 CATACCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTC 700913 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| ||||| || || || || || || ||||| ||||| || || Sbjct 700912 GGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGG 700853 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| ||||| | ||| |||| || Sbjct 700852 AGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTC 700793 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| || || || ||||| |||||||| Sbjct 700792 CACCTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||||| | | ||||| ||||| ||||| ||||| || || || || | Sbjct 701204 TTTACTGGCCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGT 701145 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| || || || || ||||||||||| ||||| ||||| | Sbjct 701144 AATCGGAAAGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGT 701085 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || |||||||| || | || ||||| ||||||| || || | Sbjct 701084 CCGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACG 701025 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | ||||| || || || || || ||||| |||||||| Sbjct 701024 ATTCGACCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 700744 CATACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 700685 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || || || || || ||||| ||||| || || Sbjct 700684 AGAAAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGG 700625 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || || || || || | ||| || | || Sbjct 700624 AGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTC 700565 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || |||| ||||| ||||| || || || || Sbjct 700564 GACTTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGAC 700526 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| || || || || ||||| ||||| Sbjct 107615 TTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 107556 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || |||||||| || ||||| || || || ||||| ||||| | || ||||| || Sbjct 107555 AGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGACATTGTCG 107496 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||||| || || |||| ||||| || || || || || || ||| Sbjct 107495 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCTTGACGAAA 107436 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 107435 ATCTGCAT 107428 Score = 100 bits (110), Expect = 9e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 700459 CATACCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 700400 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||| || || ||||||||||| || || Sbjct 700399 GGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGG 700340 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | || || | ||| Sbjct 700339 AGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 700280 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || || || || | ||||| || || | ||| Sbjct 700279 GACCTCTAGCGTGATGGTCTTGCCCGTCACTGT 700247 >seq5 Length=2148850 Score = 107 bits (118), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | ||||| ||| || || | |||||||||||||||||| || || Sbjct 305648 CGAGGCACACCCAGGGTAACGTTC---TTGGAAGAAACACCAGCAAAGTGGAAGGTGTTG 305592 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| |||||||||||| || ||||| |||| ||| || ||||| || Sbjct 305591 AGCGTCATCTGAGTAGCGGGCTCACCAATCGATTGCGCAGCAAGAACACCGACCATCTCA 305532 Query 377578 CCAGGATTGA 377587 ||||| |||| Sbjct 305531 CCAGGGTTGA 305522 >seq10 Length=914541 Score = 102 bits (112), Expect = 2e-16 Identities = 187/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| || || || || || ||| | |||||| || || || || | Sbjct 251244 ATGCTGTCGTCACTGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCCACCAAGGACG 251303 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || ||||| || | || ||||| | || || || || |||||||| || || | Sbjct 251304 CCGGTCTTATTGCCGGTCTTAACGTTCTGCGTATCATCAACGAGCCCACTGCCGCTGCCA 251363 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAG 349787 |||| || || ||||| || | | || || || | || || || ||| | | Sbjct 251364 TTGCCTACGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGG 251423 Query 349788 GTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAG 349847 ||||||||||||| ||||| || || || || |||| || || || || || || || Sbjct 251424 GTGGTGGTACTTTCGATGTCTCTCTGCTGACCATTGAGGATGGTATCTTCGAGGTCAAGT 251483 Query 349848 CAACTGCTGGTGATACACATCTTGGTGGAGAAGA 349881 | || |||||||| || || || ||||| || || Sbjct 251484 CCACCGCTGGTGACACCCACCTGGGTGGTGAGGA 251517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253817574090