Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq19 293 3e-74
seq18 140 4e-28
seq5 96.9 4e-15
>seq19
Length=545716
Score = 293 bits (324), Expect = 3e-74
Identities = 494/710 (70%), Gaps = 10/710 (1%)
Strand=Plus/Minus
Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290
||||| |||||||||| || | ||| ||| |||| ||| || |||||| ||||
Sbjct 482808 CGTGTTATTGAGACGTACAACCTCATGTCTAGC---AAGTTCTTCACCCACGCCTCGCCC 482752
Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350
|| || |||||||| |||||| || ||||| |||| ||||||||||| | |||
Sbjct 482751 ACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATG 482692
Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410
||||| ||||||||||| ||||| ||||| || |||||| ||||| |||||||||
Sbjct 482691 AAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGATCTCCAAG 482632
Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468
| | |||||||||||| || | || || | || | ||||| | ||| | ||
Sbjct 482631 ATGGCTGGTGGTATCGGTCTCAA-TG-TCCACCGCATTCGTGCCACTGGCTCGTACATTG 482574
Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528
|| || ||||| | || | || ||| | || ||||| || || ||||||||||| |
Sbjct 482573 CCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTG 482514
Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588
|||| |||||| |||||||||| |||||| || | || ||||| ||||| ||||
Sbjct 482513 CCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGC 482454
Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648
|||||||||| || | | ||||| || || ||||| ||| || || | || |||
Sbjct 482453 CGTGGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGG 482394
Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708
| ||| ||| || || || || ||||||||||| || ||||||||| | || |
Sbjct 482393 TTCGCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCG 482334
Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCT 53768
||||| ||| || ||| |||||||||||| ||||||||||| ||||| | | ||
Sbjct 482333 AGAAGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCT 482274
Query 53769 ACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGA 53828
|||| ||||||||| | | |||| | ||||| ||||||| | |
Sbjct 482273 ACGGCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGT 482214
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
| ||||||| | || | ||| | || || || || |||| ||||| || | |
Sbjct 482213 CGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACC 482154
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938
||| |||| |||||||| |||| ||||||||||||||||||
Sbjct 482153 CGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAAC 482104
Score = 122 bits (134), Expect = 1e-22
Identities = 147/199 (74%), Gaps = 6/199 (3%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGA 55784
|||||| | | ||| ||| |||||||||||| | ||| || | ||| | |||
Sbjct 481331 TCAAGGCGCTGTACAAGACTGTGTGGGAGATTTCGCAGC---GTACGGTTGTGCAGATGG 481275
Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844
||||||||||||||| | ||||||||||||||||| || ||||| |||| || | |
Sbjct 481274 CTGCTGATCGTGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACATTCACATGAAGGACC 481215
Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904
|| | ||| |||| | | | ||||||||| || |||||| ||| ||||||||||
Sbjct 481214 CTACGATGGGCAAGATTACCAGCATGCACTTTGCGGGCTGGAAGCTGGGTCTCAAGACGG 481155
Query 55905 GTATGTACTATCTGCGGAC 55923
| |||||||| ||||| ||
Sbjct 481154 GCATGTACTACCTGCGTAC 481136
>seq18
Length=564976
Score = 140 bits (154), Expect = 4e-28
Identities = 536/826 (65%), Gaps = 38/826 (5%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| ||||| || ||||| || || ||||||||||| || ||| |||||||||||||||
Sbjct 230649 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATG 230590
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579
|||| || |||||| | | | ||| | |||||| |||| ||| ||
Sbjct 230589 AAGTCAAAGGGGTTCGTGGAGCGGTAGAC---CTTCTCGTTGCCAAGGGCAACCAGCAGA 230533
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || || ||||| | |||||||||| |||| | || | |||||| | || |
Sbjct 230532 CGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCG 230473
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697
|| ||||| |||||||| | ||||| |||| | | ||| ||| || | ||||
Sbjct 230472 CAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAA--TGACAACGGCATCGGTGATGATCT 230415
Query 74698 TGTGAATGT-CTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753
| || ||| || ||||| | | ||||||| ||| | ||| | || ||||
Sbjct 230414 CCTCAACAAGCTTCTTGCTAGGGCGGGTGT---TCAGGTGCGAGAAGAGCAGGCA-GGCA 230359
Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813
|| || ||| || || || | |||| || || ||||| | || || |||
Sbjct 230358 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGC 230299
Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873
|| || |||||||| || ||| || |||| ||| | || ||||||||| ||
Sbjct 230298 ATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCC 230239
Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCAT 74926
||||| |||||||| || || || || || || ||| | |||||| ||
Sbjct 230238 TCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAA-GGTCGACTCGCGGTCGGAA---AT 230183
Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGA 74985
||| | ||||||| || || || || || ||| ||| | | ||||| || | ||
Sbjct 230182 CCACTTGAGAGCCCAGTCGGCCTTGCGGC-GAATGCAAGGAATGGTGTCGATGGCGTTGA 230124
Query 74986 AGAGGCTTGCCTTCTCTTCG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043
| ||| | || | || | || ||||||| | |||| || | || ||||||||
Sbjct 230123 ACAGG--TAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGT 230066
Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103
|||||| || || ||| | | |||| | ||||||| | || ||||| | ||
Sbjct 230065 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 230006
Query 75104 CTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGC 75163
||| || || || ||| | | | | ||||| |||| ||||||||||| || ||
Sbjct 230005 CTGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGC 229946
Query 75164 GAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC---GTCAGTGAGTTTGTCCCA 75220
||| || ||||| || ||| |||| || || || || | |||| |||
Sbjct 229945 GAAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCA 229886
Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266
|| | || ||| | || ||||||||||||| |||||||||||
Sbjct 229885 GTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAA 229840
>seq5
Length=2148850
Score = 96.9 bits (106), Expect = 4e-15
Identities = 280/427 (66%), Gaps = 12/427 (3%)
Strand=Plus/Minus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| || || || || || |||||||||||||| | ||| || | || || ||||||| |
Sbjct 1178796 CCCGTGCCAATACCATCGGCACCGTTGACCAGCACCATGGGAATGATGGGAGCGTAAACC 1178737
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCCG 151993
| ||||| | || | || || || | || | || |||||| ||| ||
Sbjct 1178736 TTGGGCTCGATCTTCTTGCCATCCTCGTACTGGTCCTCCA-----GAATTGGCTCATCCA 1178682
Query 151994 GATCG---AATATCCGTCGAGTCATAGGACT-CAAACGCGTGAAGATGTATCGGGAGCTG 152049
| || || | || || | || ||| | || || ||| |||||| || | |
Sbjct 1178681 GCACGCTAAACACGCGGCGTG-CAAAGGGCGACAGGCGTGTGTGGATGTAACGAGCCGAG 1178623
Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109
|| |||||| ||||| ||||| || | |||||| | || |||||| ||| ||||
Sbjct 1178622 GCAGCATCCGAACCACCAGCCAGGCGAGATCCAAAGTTACCGCTGGGCTCCAGGCAGTTG 1178563
Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169
| |||||||| || || || ||||| |||| | | ||| || ||||| ||
Sbjct 1178562 ACGTTGTTGGAACCGACAAAGTTCTGTGCCAGACCAATAATGGTCTGCTGCAACGATGCC 1178503
Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229
|||||||| || || || || | | | | || || || | || ||||||||||
Sbjct 1178502 TCACCGTGCTGGTAGGCAGTGCGACCGGAAACATAACCAGCAAGCTCGACCACCTTCATA 1178443
Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289
||| | | ||| || ||| ||||||||||| ||||||||||| || || ||
Sbjct 1178442 TCCTTGACAATGTTGCTCATGAAGCAGGCGTAAATGACCTTGCGCTGACCGGGCTTGAAG 1178383
Query 152290 CCGTCCA 152296
|||||||
Sbjct 1178382 CCGTCCA 1178376
Score = 95.1 bits (104), Expect = 1e-14
Identities = 181/265 (68%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
||||| ||| |||||||||| ||||||||| |||||||| || || | ||
Sbjct 1178649 AGGCGTGTGTGGATGTAACGAGCCGAGGCAGCATCCGAACCACCAGCCAGGCGAGATCCA 1178590
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | || || ||||||| | ||| | |||||||| || |||||||| || ||||
Sbjct 1178589 AAGTTACCGCTGGGCTCCAGGCAGTTGACGTTGTTGGAACCGACAAAGTTCTGTGCCAGA 1178530
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478
| ||| || || | |||||||| || || || || || | | | ||
Sbjct 1178529 CCAATAATGGTCTGCTGCAACGATGCCTCACCGTGCTGGTAGGCAGTGCGACCGGAAACA 1178470
Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536
|| || || |||| |||||||||| || |||| | ||| || ||| |||||| |
Sbjct 1178469 TAACCAGCAAGCTCGACCACCTTCATATCCTTGACA--ATGTTGCTCATGAAGCAGGCGT 1178412
Query 117537 AAATCACCTTGCGCTGACTTGGCTT 117561
|||| ||||||||||||| |||||
Sbjct 1178411 AAATGACCTTGCGCTGACCGGGCTT 1178387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215794794000
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