Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19 293 3e-74 seq18 140 4e-28 seq5 96.9 4e-15 >seq19 Length=545716 Score = 293 bits (324), Expect = 3e-74 Identities = 494/710 (70%), Gaps = 10/710 (1%) Strand=Plus/Minus Query 53234 CGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCA 53290 ||||| |||||||||| || | ||| ||| |||| ||| || |||||| |||| Sbjct 482808 CGTGTTATTGAGACGTACAACCTCATGTCTAGC---AAGTTCTTCACCCACGCCTCGCCC 482752 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 || || |||||||| |||||| || ||||| |||| ||||||||||| | ||| Sbjct 482751 ACTCTTTTCAACGCGGGTACGCCCCAGGCTCAGCTGTCCTCTTGCTTCCTGGTTGACATG 482692 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||||| ||||||||||| ||||| ||||| || |||||| ||||| ||||||||| Sbjct 482691 AAGGAAGACTCGATCGAGGGCATTTACGATACTCTCAAGACTTGTGCTATGATCTCCAAG 482632 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCA 53468 | | |||||||||||| || | || || | || | ||||| | ||| | || Sbjct 482631 ATGGCTGGTGGTATCGGTCTCAA-TG-TCCACCGCATTCGTGCCACTGGCTCGTACATTG 482574 Query 53469 AGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGG 53528 || || ||||| | || | || ||| | || ||||| || || ||||||||||| | Sbjct 482573 CCGGCACAAACGGTACCTCCAACGGTATCATTCCCATGCTGCGTGTGTTCAACAACACTG 482514 Query 53529 CCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGC 53588 |||| |||||| |||||||||| |||||| || | || ||||| ||||| |||| Sbjct 482513 CCCGCTACGTCGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATTTACCTGGAGC 482454 Query 53589 CGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA 53648 |||||||||| || | | ||||| || || ||||| ||| || || | || ||| Sbjct 482453 CGTGGCACGCGGATGTGTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGG 482394 Query 53649 TGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGG 53708 | ||| ||| || || || || ||||||||||| || ||||||||| | || | Sbjct 482393 TTCGCGCCCGCGATCTTTTCCTGGCGCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCG 482334 Query 53709 AGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCT 53768 ||||| ||| || ||| |||||||||||| ||||||||||| ||||| | | || Sbjct 482333 AGAAGAACGCTGACTGGACCCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGATTGCT 482274 Query 53769 ACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGA 53828 |||| ||||||||| | | |||| | ||||| ||||||| | | Sbjct 482273 ACGGCGAGGAGTTTGAGGCCCTGTACGAAAAGTACGAGCAAGAGGGCCGTGGCCGCGCGT 482214 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 | ||||||| | || | ||| | || || || || |||| ||||| || | | Sbjct 482213 CGATCAAGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCCCAGACCGAGACAGGCAACC 482154 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| |||| |||||||| |||| |||||||||||||||||| Sbjct 482153 CGTTCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAAC 482104 Score = 122 bits (134), Expect = 1e-22 Identities = 147/199 (74%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG---ACATGA 55784 |||||| | | ||| ||| |||||||||||| | ||| || | ||| | ||| Sbjct 481331 TCAAGGCGCTGTACAAGACTGTGTGGGAGATTTCGCAGC---GTACGGTTGTGCAGATGG 481275 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||||||||||||||| | ||||||||||||||||| || ||||| |||| || | | Sbjct 481274 CTGCTGATCGTGGTGCCTTTATCGACCAGTCCCAGTCGCTCAACATTCACATGAAGGACC 481215 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 || | ||| |||| | | | ||||||||| || |||||| ||| |||||||||| Sbjct 481214 CTACGATGGGCAAGATTACCAGCATGCACTTTGCGGGCTGGAAGCTGGGTCTCAAGACGG 481155 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||| ||||| || Sbjct 481154 GCATGTACTACCTGCGTAC 481136 >seq18 Length=564976 Score = 140 bits (154), Expect = 4e-28 Identities = 536/826 (65%), Gaps = 38/826 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| || || ||||||||||| || ||| ||||||||||||||| Sbjct 230649 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTACCGCCCAGCGAGATGTTCTCCATG 230590 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 |||| || |||||| | | | ||| | |||||| |||| ||| || Sbjct 230589 AAGTCAAAGGGGTTCGTGGAGCGGTAGAC---CTTCTCGTTGCCAAGGGCAACCAGCAGA 230533 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || ||||| | |||||||||| |||| | || | |||||| | || | Sbjct 230532 CGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGCAGGGCG 230473 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 || ||||| |||||||| | ||||| |||| | | ||| ||| || | |||| Sbjct 230472 CAAGGCAGAGCCTCGGTCAGGAACTCCTTCTCAA--TGACAACGGCATCGGTGATGATCT 230415 Query 74698 TGTGAATGT-CTT--TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | || ||| || ||||| | | ||||||| ||| | ||| | || |||| Sbjct 230414 CCTCAACAAGCTTCTTGCTAGGGCGGGTGT---TCAGGTGCGAGAAGAGCAGGCA-GGCA 230359 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| || || || | |||| || || ||||| | || || ||| Sbjct 230358 AAGTCGGTGTGCAGACCCTCGTCACGCGAAATCAGCTCGTTGGAAAAGGTCAGACCGGGC 230299 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || |||||||| || ||| || |||| ||| | || ||||||||| || Sbjct 230298 ATCAGACCACGCTTGCGCAGCCAGAAAATGGAGGCGAAAGCGCCCGAGAAGAAGATACCC 230239 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCAT 74926 ||||| |||||||| || || || || || || ||| | |||||| || Sbjct 230238 TCGACGGCGGCAAAGGCCACCAGACGCTGGGCAAA-GGTCGACTCGCGGTCGGAA---AT 230183 Query 74927 CCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGA 74985 ||| | ||||||| || || || || || ||| ||| | | ||||| || | || Sbjct 230182 CCACTTGAGAGCCCAGTCGGCCTTGCGGC-GAATGCAAGGAATGGTGTCGATGGCGTTGA 230124 Query 74986 AGAGGCTTGCCTTCTCTTCG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGT 75043 | ||| | || | || | || ||||||| | |||| || | || |||||||| Sbjct 230123 ACAGG--TAGCTGCGCTGGGCAGGCTCCTTGATGTAGGTGTCGATGAGCAGCGAGTACGT 230066 Query 75044 CTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAAT 75103 |||||| || || ||| | | |||| | ||||||| | || ||||| | || Sbjct 230065 CTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGAT 230006 Query 75104 CTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGC 75163 ||| || || || ||| | | | | ||||| |||| ||||||||||| || || Sbjct 230005 CTGGACCTCACCCGAGAAACGCTCGACCAAGTTCTCGTTGACAATGCCGTCCGAAGCAGC 229946 Query 75164 GAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC---GTCAGTGAGTTTGTCCCA 75220 ||| || ||||| || ||| |||| || || || || | |||| ||| Sbjct 229945 GAAGAAGGCCAGGACGTGCGAGATGAAGTACTTTTCGTCCTTGTTCATGCGGTTGTTCCA 229886 Query 75221 ATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 || | || ||| | || ||||||||||||| ||||||||||| Sbjct 229885 GTCGTGAAGATCCTTGGACAGATCAATCTCCTCGGCCGTCCAGAAA 229840 >seq5 Length=2148850 Score = 96.9 bits (106), Expect = 4e-15 Identities = 280/427 (66%), Gaps = 12/427 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || || || |||||||||||||| | ||| || | || || ||||||| | Sbjct 1178796 CCCGTGCCAATACCATCGGCACCGTTGACCAGCACCATGGGAATGATGGGAGCGTAAACC 1178737 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCCG 151993 | ||||| | || | || || || | || | || |||||| ||| || Sbjct 1178736 TTGGGCTCGATCTTCTTGCCATCCTCGTACTGGTCCTCCA-----GAATTGGCTCATCCA 1178682 Query 151994 GATCG---AATATCCGTCGAGTCATAGGACT-CAAACGCGTGAAGATGTATCGGGAGCTG 152049 | || || | || || | || ||| | || || ||| |||||| || | | Sbjct 1178681 GCACGCTAAACACGCGGCGTG-CAAAGGGCGACAGGCGTGTGTGGATGTAACGAGCCGAG 1178623 Query 152050 GCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTG 152109 || |||||| ||||| ||||| || | |||||| | || |||||| ||| |||| Sbjct 1178622 GCAGCATCCGAACCACCAGCCAGGCGAGATCCAAAGTTACCGCTGGGCTCCAGGCAGTTG 1178563 Query 152110 AGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCT 152169 | |||||||| || || || ||||| |||| | | ||| || ||||| || Sbjct 1178562 ACGTTGTTGGAACCGACAAAGTTCTGTGCCAGACCAATAATGGTCTGCTGCAACGATGCC 1178503 Query 152170 TCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATG 152229 |||||||| || || || || | | | | || || || | || |||||||||| Sbjct 1178502 TCACCGTGCTGGTAGGCAGTGCGACCGGAAACATAACCAGCAAGCTCGACCACCTTCATA 1178443 Query 152230 TCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAA 152289 ||| | | ||| || ||| ||||||||||| ||||||||||| || || || Sbjct 1178442 TCCTTGACAATGTTGCTCATGAAGCAGGCGTAAATGACCTTGCGCTGACCGGGCTTGAAG 1178383 Query 152290 CCGTCCA 152296 ||||||| Sbjct 1178382 CCGTCCA 1178376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 181/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| ||| |||||||||| ||||||||| |||||||| || || | || Sbjct 1178649 AGGCGTGTGTGGATGTAACGAGCCGAGGCAGCATCCGAACCACCAGCCAGGCGAGATCCA 1178590 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | || || ||||||| | ||| | |||||||| || |||||||| || |||| Sbjct 1178589 AAGTTACCGCTGGGCTCCAGGCAGTTGACGTTGTTGGAACCGACAAAGTTCTGTGCCAGA 1178530 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | ||| || || | |||||||| || || || || || | | | || Sbjct 1178529 CCAATAATGGTCTGCTGCAACGATGCCTCACCGTGCTGGTAGGCAGTGCGACCGGAAACA 1178470 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || || |||| |||||||||| || |||| | ||| || ||| |||||| | Sbjct 1178469 TAACCAGCAAGCTCGACCACCTTCATATCCTTGACA--ATGTTGCTCATGAAGCAGGCGT 1178412 Query 117537 AAATCACCTTGCGCTGACTTGGCTT 117561 |||| ||||||||||||| ||||| Sbjct 1178411 AAATGACCTTGCGCTGACCGGGCTT 1178387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215794794000