Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 2e-15 >seq6 Length=1902109 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| ||| ||||| |||||| || ||||| || || ||||| || || | || ||| Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || ||||| || || | |||||| |||||||| || | ||||||||||| | Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTT 34675 ||| || | || || | | || || | || | |||||| || | ||| || || | Sbjct 700830 ATC-TTCGACTTGACATTGTCAATG-GTATCCGATGACTCCACCTCAAGGGTGATAGTCT 700773 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || ||||| |||||||| Sbjct 700772 TTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 95.1 bits (104), Expect = 8e-15 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||| ||||| |||||| || ||||| ||||| ||||| || || Sbjct 701187 AGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGG 701128 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || ||||| ||||| || | |||||| |||||||| || | |||||| Sbjct 701127 CCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCC 701068 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666 ||||| ||| || | || || | ||| |||| | || | || || || | | Sbjct 701067 TTGTC-CTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGAT-TCGACCTCTAGCG 701010 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | ||| |||||||| |||||||| Sbjct 701009 TGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || ||||| || || Sbjct 700731 AGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 700672 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || ||||| || || | |||||| |||||||| || | |||||| Sbjct 700671 CCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCC 700612 Query 34609 TTGTC 34613 ||||| Sbjct 700611 TTGTC 700607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729484926990