Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq6 96.9 2e-15
>seq6
Length=1902109
Score = 96.9 bits (106), Expect = 2e-15
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|||| ||| ||||| |||||| || ||||| || || ||||| || || | || |||
Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|| || || ||||| || || | |||||| |||||||| || | ||||||||||| |
Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831
Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTATCGTTT 34675
||| || | || || | | || || | || | |||||| || | ||| || || |
Sbjct 700830 ATC-TTCGACTTGACATTGTCAATG-GTATCCGATGACTCCACCTCAAGGGTGATAGTCT 700773
Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| ||||| | || || ||||| ||||||||
Sbjct 700772 TTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 95.1 bits (104), Expect = 8e-15
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| |||| |||| ||| ||||| |||||| || ||||| ||||| ||||| || ||
Sbjct 701187 AGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTACGG 701128
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| ||||| || | |||||| |||||||| || | ||||||
Sbjct 701127 CCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGAATACCCTCC 701068
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666
||||| ||| || | || || | ||| |||| | || | || || || | |
Sbjct 701067 TTGTC-CTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGAT-TCGACCTCTAGCG 701010
Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || || || || || | ||| |||||||| ||||||||
Sbjct 701009 TGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 86.0 bits (94), Expect = 4e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 700731 AGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 700672
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || ||||| || || | |||||| |||||||| || | ||||||
Sbjct 700671 CCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCC 700612
Query 34609 TTGTC 34613
|||||
Sbjct 700611 TTGTC 700607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729484926990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |