Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 1e-20
>seq1
Length=4116995
Score = 114 bits (126), Expect = 1e-20
Identities = 207/294 (70%), Gaps = 8/294 (3%)
Strand=Plus/Plus
Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787
|||||||| ||| | |||| ||||| || ||||||||| || ||| |||
Sbjct 2530530 ACGTAGAACTGGGCAAACATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCCGCCGGA 2530589
Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847
|||||||| | ||| | ||| | ||| || | ||| | ||||| ||| | |||
Sbjct 2530590 TTCCACGCACTCATAATGATGCGTCTATCGTAGGGGGTGTTCTTCAGCTTGTGCACCACC 2530649
Query 6848 TACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905
| |||| |||||||| | ||||| |||| ||||| | || ||| | | |||||| |
Sbjct 2530650 T-CTGCCAGCTGGTCGACACCCTGGCCCGTGTAGTCTGTCTGCGCATCGAC-ATACTCTG 2530707
Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965
| ||||| || | ||||||||||||||| || ||||||||||||||||| |||| | |
Sbjct 2530708 CGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAGTCGCCCTCGGCCCG-GTGG 2530766
Query 6966 GGAA--CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| ||| ||| ||| ||| | | || ||||||| ||||||| |||||
Sbjct 2530767 CCCAGGCCCACGC-TGTTCAGGTACGCGCGCGACCCGTTGCCGTCCCATATCTT 2530819
Score = 114 bits (126), Expect = 1e-20
Identities = 207/294 (70%), Gaps = 8/294 (3%)
Strand=Plus/Minus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTC 34385
||||| ||||||| ||||||| || | | ||| ||| ||| ||| | | | |
Sbjct 2530819 AAGATATGGGACGGCAACGGGTCGCGCGCGTACCTGAACA-GCGTGGGCCTGGGCCAC-C 2530762
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
||| ||||||||||||||||| || ||||||||||||||| | || ||||| || ||||
Sbjct 2530761 GGGCCGAGGGCGACTTGGGCCCCGTGTACGGGTTCCAGTGGCGGCATTTTGGCGCAGAGT 2530702
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGAT 34503
|| | | ||| || | ||||| |||| ||||| | |||||||| |||| | ||| |
Sbjct 2530701 AT-GTCGATGCGCAGACAGACTACACGGGCCAGGGTGTCGACCAGCTGGCAG-AGGTGGT 2530644
Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563
||| ||||| | ||| | || ||| | ||| | ||| | |||||||| |||
Sbjct 2530643 GCACAAGCTGAAGAACACCCCCTACGATAGACGCATCATTATGAGTGCGTGGAATCCGGC 2530584
Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617
||| || ||||||||| || ||||| |||| | ||| ||||||||
Sbjct 2530583 GGACCTGAAGAAGATGGCGCTGCCGCCGTGTCACATGTTTGCCCAGTTCTACGT 2530530
Score = 86.0 bits (94), Expect = 6e-12
Identities = 217/324 (67%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 6395 TACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCC 6454
||||||| || || |||| || ||| |||||| ||| || || | || ||||||
Sbjct 2530074 TACACCGACATCTTCATCGCCAAAGCCTTGTGCGGGTTGTATCCCTCAATGACAAAGTCC 2530133
Query 6455 TCGCTCCTAAAGTCATCGATTGAGGTGACGG-CTCGAATA-----ATTTTGAGCTGGGGG 6508
|| | | || ||||||| | | ||| |||| | || |||||| |||||
Sbjct 2530134 TCCAGCTTCCAGCCATCGATACTGCAGCCGGGCTCGCGTCCCTCCATCTTGAGCAGGGGG 2530193
Query 6509 AACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATA 6568
|| | || ||||| || | | || | | | ||| ||||| ||| | | |||||
Sbjct 2530194 AAAGCCCGCGGCTCACGCTCTATTTGCACCTGTAGCGCCTCGACGTGATCGACGTAGACG 2530253
Query 6569 TGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACGACATGAGCG 6625
||||| || |||| |||| || ||| || ||| ||||| | || | | | ||
Sbjct 2530254 TGCGCGTCGCCCATGACGT--GCGTCAGGCTGCCC-GGAACAAGATCCGTGGCTCGCGCA 2530310
Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685
| ||||| |||||||| | ||| ||||||||||| ||||| || | ||||||||
Sbjct 2530311 AGCATGTGTGTGAGCAGCGAGTACGAGGCAATGTTGAAGGGCACTCCAAGACCCATGTCG 2530370
Query 6686 CCCGATCGTTGATAGAGCTGGCAG 6709
| ||| || || || |||||||||
Sbjct 2530371 CACGAGCGCTGGTACAGCTGGCAG 2530394
Score = 86.0 bits (94), Expect = 6e-12
Identities = 217/324 (67%), Gaps = 12/324 (4%)
Strand=Plus/Minus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
||||||||| || || || ||| | |||||||| | || ||||| |||||||||||
Sbjct 2530394 CTGCCAGCTGTACCAGCGCTCGTGCGACATGGGTCTTGGAGTGCCCTTCAACATTGCCTC 2530335
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754
||| | |||||||| ||||| | || | | | || | ||||| ||| || |||
Sbjct 2530334 GTACTCGCTGCTCACACACATGCTTGCGCGAGCCACGGATCTTGTTCC-GGGCAGCCTGA 2530276
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| |||| |||| || ||||| ||||| | | ||| ||||| ||| | | | ||
Sbjct 2530275 CGC--ACGTCATGGGCGACGCGCACGTCTACGTCGATCACGTCGAGGCGCTACAGGTGCA 2530218
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT-----TATTCGAG-CCGTCAC 34866
| | || ||||| || | ||||||| |||||| || | |||| ||| |
Sbjct 2530217 AATAGAGCGTGAGCCGCGGGCTTTCCCCCTGCTCAAGATGGAGGGACGCGAGCCCGGCTG 2530158
Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGC 34926
| ||||||| || | | |||||||| || | || || ||| |||||| |||
Sbjct 2530157 CAGTATCGATGGCTGGAAGCTGGAGGACTTTGTCATTGAGGGATACAACCCGCACAAGGC 2530098
Query 34927 CCTGAAGATGGAGTTGGCGGTGTA 34950
|| |||| || || |||||||
Sbjct 2530097 TTTGGCGATGAAGATGTCGGTGTA 2530074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262231901600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |