Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 >seq1 Length=4116995 Score = 114 bits (126), Expect = 1e-20 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 |||||||| ||| | |||| ||||| || ||||||||| || ||| ||| Sbjct 2530530 ACGTAGAACTGGGCAAACATGTGACACGGCGGCAGCGCCATCTTCTTCAGGTCCGCCGGA 2530589 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACG 6847 |||||||| | ||| | ||| | ||| || | ||| | ||||| ||| | ||| Sbjct 2530590 TTCCACGCACTCATAATGATGCGTCTATCGTAGGGGGTGTTCTTCAGCTTGTGCACCACC 2530649 Query 6848 TACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCG 6905 | |||| |||||||| | ||||| |||| ||||| | || ||| | | |||||| | Sbjct 2530650 T-CTGCCAGCTGGTCGACACCCTGGCCCGTGTAGTCTGTCTGCGCATCGAC-ATACTCTG 2530707 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATG 6965 | ||||| || | ||||||||||||||| || ||||||||||||||||| |||| | | Sbjct 2530708 CGCCAAAATGCCGCCACTGGAACCCGTACACGGGGCCCAAGTCGCCCTCGGCCCG-GTGG 2530766 Query 6966 GGAA--CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| ||| | | || ||||||| ||||||| ||||| Sbjct 2530767 CCCAGGCCCACGC-TGTTCAGGTACGCGCGCGACCCGTTGCCGTCCCATATCTT 2530819 Score = 114 bits (126), Expect = 1e-20 Identities = 207/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG--TTCCCATCTC 34385 ||||| ||||||| ||||||| || | | ||| ||| ||| ||| | | | | Sbjct 2530819 AAGATATGGGACGGCAACGGGTCGCGCGCGTACCTGAACA-GCGTGGGCCTGGGCCAC-C 2530762 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 ||| ||||||||||||||||| || ||||||||||||||| | || ||||| || |||| Sbjct 2530761 GGGCCGAGGGCGACTTGGGCCCCGTGTACGGGTTCCAGTGGCGGCATTTTGGCGCAGAGT 2530702 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGAT 34503 || | | ||| || | ||||| |||| ||||| | |||||||| |||| | ||| | Sbjct 2530701 AT-GTCGATGCGCAGACAGACTACACGGGCCAGGGTGTCGACCAGCTGGCAG-AGGTGGT 2530644 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||| ||||| | ||| | || ||| | ||| | ||| | |||||||| ||| Sbjct 2530643 GCACAAGCTGAAGAACACCCCCTACGATAGACGCATCATTATGAGTGCGTGGAATCCGGC 2530584 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT 34617 ||| || ||||||||| || ||||| |||| | ||| |||||||| Sbjct 2530583 GGACCTGAAGAAGATGGCGCTGCCGCCGTGTCACATGTTTGCCCAGTTCTACGT 2530530 Score = 86.0 bits (94), Expect = 6e-12 Identities = 217/324 (67%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 6395 TACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCC 6454 ||||||| || || |||| || ||| |||||| ||| || || | || |||||| Sbjct 2530074 TACACCGACATCTTCATCGCCAAAGCCTTGTGCGGGTTGTATCCCTCAATGACAAAGTCC 2530133 Query 6455 TCGCTCCTAAAGTCATCGATTGAGGTGACGG-CTCGAATA-----ATTTTGAGCTGGGGG 6508 || | | || ||||||| | | ||| |||| | || |||||| ||||| Sbjct 2530134 TCCAGCTTCCAGCCATCGATACTGCAGCCGGGCTCGCGTCCCTCCATCTTGAGCAGGGGG 2530193 Query 6509 AACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATA 6568 || | || ||||| || | | || | | | ||| ||||| ||| | | ||||| Sbjct 2530194 AAAGCCCGCGGCTCACGCTCTATTTGCACCTGTAGCGCCTCGACGTGATCGACGTAGACG 2530253 Query 6569 TGCGCATCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACGACATGAGCG 6625 ||||| || |||| |||| || ||| || ||| ||||| | || | | | || Sbjct 2530254 TGCGCGTCGCCCATGACGT--GCGTCAGGCTGCCC-GGAACAAGATCCGTGGCTCGCGCA 2530310 Query 6626 ATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCT 6685 | ||||| |||||||| | ||| ||||||||||| ||||| || | |||||||| Sbjct 2530311 AGCATGTGTGTGAGCAGCGAGTACGAGGCAATGTTGAAGGGCACTCCAAGACCCATGTCG 2530370 Query 6686 CCCGATCGTTGATAGAGCTGGCAG 6709 | ||| || || || ||||||||| Sbjct 2530371 CACGAGCGCTGGTACAGCTGGCAG 2530394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 217/324 (67%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || ||| | |||||||| | || ||||| ||||||||||| Sbjct 2530394 CTGCCAGCTGTACCAGCGCTCGTGCGACATGGGTCTTGGAGTGCCCTTCAACATTGCCTC 2530335 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754 ||| | |||||||| ||||| | || | | | || | ||||| ||| || ||| Sbjct 2530334 GTACTCGCTGCTCACACACATGCTTGCGCGAGCCACGGATCTTGTTCC-GGGCAGCCTGA 2530276 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || |||| |||| || ||||| ||||| | | ||| ||||| ||| | | | || Sbjct 2530275 CGC--ACGTCATGGGCGACGCGCACGTCTACGTCGATCACGTCGAGGCGCTACAGGTGCA 2530218 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT-----TATTCGAG-CCGTCAC 34866 | | || ||||| || | ||||||| |||||| || | |||| ||| | Sbjct 2530217 AATAGAGCGTGAGCCGCGGGCTTTCCCCCTGCTCAAGATGGAGGGACGCGAGCCCGGCTG 2530158 Query 34867 CTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGC 34926 | ||||||| || | | |||||||| || | || || ||| |||||| ||| Sbjct 2530157 CAGTATCGATGGCTGGAAGCTGGAGGACTTTGTCATTGAGGGATACAACCCGCACAAGGC 2530098 Query 34927 CCTGAAGATGGAGTTGGCGGTGTA 34950 || |||| || || ||||||| Sbjct 2530097 TTTGGCGATGAAGATGTCGGTGTA 2530074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262231901600