Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 179 8e-40
seq16 147 5e-30
seq18 109 1e-18
>seq6
Length=1902109
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || |||||||| | || || || ||||||||||| || | |
Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||||||||| || || || || |||||||||| ||| || ||||| |||
Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| || ||||| | || || | || || |||||||| | ||||||
Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTGTCCGACGATTCGACC 701017
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 701016 TCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| ||||| || | || || || ||||||||||||||||
Sbjct 700741 ACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 700682
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| |||||||| || || || ||||| || |||| ||| || ||||| ||
Sbjct 700681 AAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGG 700622
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || ||| | ||||| || ||||| | |||||
Sbjct 700621 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGAC 700562
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
||||||||| || ||||| || || | ||||| |||| |||
Sbjct 700561 TTCGAGAGTAATGGTCTTGCCGGTGAGGGTCTTGACGACTAT 700520
Score = 159 bits (176), Expect = 7e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | ||| || || |||||||||||||| |
Sbjct 700456 ACCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 700397
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| || || || || || || || | |||||| ||||| ||
Sbjct 700396 AAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGGAGG 700337
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| |||||||| | || ||| | ||||| ||||| |||| ||||||
Sbjct 700336 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCGAC 700277
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || ||||| ||||| |||||||
Sbjct 700276 CTCTAGCGTGATGGTCTTGCCCGTCA 700251
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||||||| | || || || |||||||||||||| |
Sbjct 700969 ACCACCACGGAGGCGGAGAACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 700910
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| |||||||| || || || ||||| || |||| ||| || ||||| ||
Sbjct 700909 AAGAGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGG 700850
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | || || || ||||| | || ||
Sbjct 700849 AATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGATGACTCCAC 700790
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | |||||| || || ||||||||
Sbjct 700789 CTCAAGGGTGATAGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 156 bits (172), Expect = 9e-33
Identities = 154/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 282904 TGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGG 282963
|||| | || |||||||||||||| | || |||||||||||||| || || || || |
Sbjct 107623 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 107564
Query 282964 CAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTA 283023
| ||||||| || || || || ||||| ||||||||||| ||||| || | || |
Sbjct 107563 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGA 107504
Query 283024 CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083
| | |||||||||||||| | || || ||||| || |||||||||||||||| ||||
Sbjct 107503 CATTGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGTCT 107444
Query 283084 TAACGAATATCTGCATTTT 283102
| ||||| |||||||| ||
Sbjct 107443 TGACGAAAATCTGCATCTT 107425
>seq16
Length=638914
Score = 147 bits (162), Expect = 5e-30
Identities = 140/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||| | || |||||||||||||| || || || || || ||||||
Sbjct 520930 TTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 520871
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| ||| || ||||| ||||| ||||||||||| |||||||| | || ||| | |||
Sbjct 520870 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 520811
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| |||||||| | ||||| || || || || ||||||||||||| ||||| |||||
Sbjct 520810 ATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 520752
>seq18
Length=564976
Score = 109 bits (120), Expect = 1e-18
Identities = 173/248 (70%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| || | |||| | ||| ||||||||| | ||| ||| | ||||||
Sbjct 230417 ATCATCACCGATGCCGTTGTCATTGAGAAGGAGTTCCTGACCGAGGCTCTGCCTTGCGCC 230476
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| | |||||||| || || |||||| ||| || || || || || || || ||| |
Sbjct 230477 CTGCTTGGCATGAACGCCGACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGTCTG 230536
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
| || || || || ||||||| || || ||||| ||||||||| | || ||||||
Sbjct 230537 CTGGTTGCCCTTGGCAACGAGAAGGTCTACCGCTCCACGAACCCCTTTGACTTCATGGAG 230596
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || || || ||||||||||| |||||||| | || || || | |
Sbjct 230597 AACATCTCGCTGGGCGGTAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAGAAG 230656
Query 230403 CCCGGTGT 230410
| |||||
Sbjct 230657 GCGGGTGT 230664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738797659620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |