Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6 138 8e-28 seq16 105 5e-18 >seq6 Length=1902109 Score = 138 bits (152), Expect = 8e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| || || || |||||| |||||||||||||||| Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| || |||||||||| ||||||||| || | ||| Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||| ||||| ||| |||||| ||| || ||| | || ||||| | ||||| | Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CAATCGTGTCCGACGATTCGA 701019 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | ||| || ||||| || || || |||||||| ||||| ||||| Sbjct 701018 CCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970 Score = 118 bits (130), Expect = 8e-22 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 44142 TGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201 |||| |||| ||||||||||| |||| || ||| | || ||||||||||| || | Sbjct 107623 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 107564 Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT-- 44259 | ||||||| ||||||||||| | || | || ||||| ||| || || ||| Sbjct 107563 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGA 107504 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 || ||| | || ||||| | ||| || ||||| | ||||||||||| ||||| ||||| Sbjct 107503 CATTGT--CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGT 107446 Query 44320 CTTCACGAAGATTTGCAT 44337 ||| ||||| || ||||| Sbjct 107445 CTTGACGAAAATCTGCAT 107428 Score = 118 bits (130), Expect = 8e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || || |||||| ||||||||||| |||| || ||| | || || Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || |||| ||||||||| || | ||| | || ||||| ||| Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | ||||| || | || |||||||| | || || |||| Sbjct 700830 ATCTTCGACTTGACATTGT--CAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCT 700773 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || ||||| ||||| Sbjct 700772 TTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| || | || ||| | || || Sbjct 700723 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 700664 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| || |||| ||||||||| || | ||| | ||| ||||| ||| Sbjct 700663 AAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 700604 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | ||||| || | || || || || | ||||| ||||| Sbjct 700603 AATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTCTT 700544 Query 44308 TCCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 700543 GCCGGTGAGGGTCTTGACGA 700524 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || || ||||| || ||| |||||| ||||||||||| || Sbjct 700459 CATACCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 700400 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || | || ||||||||||| || || || || | ||| ||||| || | Sbjct 700399 GGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGG 700340 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| ||||| ||| ||||| ||| | | | |||||||||| ||||| Sbjct 700339 AGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 700280 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| | ||| || ||||| ||||| Sbjct 700279 GACCTCTAGCGTGATGGTCTTGCCCGT 700253 >seq16 Length=638914 Score = 105 bits (116), Expect = 5e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| |||| || ||| | || ||||||||||| || || |||| Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| ||||||||| || | || | || ||||| ||| ||||| ||| | | Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 520813 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | ||| || ||||||| ||||| ||||| ||||| |||||||| |||| Sbjct 520812 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 520753 Query 44328 A 44328 | Sbjct 520752 A 520752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990268378510