Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6 138 8e-28
seq16 105 5e-18
>seq6
Length=1902109
Score = 138 bits (152), Expect = 8e-28
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||| || || || |||||| ||||||||||||||||
Sbjct 701196 CCACCACGCAGGCGCAGAACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 701137
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || | || ||||||||||| || |||||||||| ||||||||| || | |||
Sbjct 701136 AGCGTACGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGA 701077
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||| ||||| ||| |||||| ||| || ||| | || ||||| | ||||| |
Sbjct 701076 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CAATCGTGTCCGACGATTCGA 701019
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | ||| || ||||| || || || |||||||| ||||| |||||
Sbjct 701018 CCTCTAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 700970
Score = 118 bits (130), Expect = 8e-22
Identities = 146/198 (74%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 44142 TGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201
|||| |||| ||||||||||| |||| || ||| | || ||||||||||| || |
Sbjct 107623 TGCTGACCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAG 107564
Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT-- 44259
| ||||||| ||||||||||| | || | || ||||| ||| || || |||
Sbjct 107563 CGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATTTTGGACTTGA 107504
Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319
|| ||| | || ||||| | ||| || ||||| | ||||||||||| ||||| |||||
Sbjct 107503 CATTGT--CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTCAGGGT 107446
Query 44320 CTTCACGAAGATTTGCAT 44337
||| ||||| || |||||
Sbjct 107445 CTTGACGAAAATCTGCAT 107428
Score = 118 bits (130), Expect = 8e-22
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
||||| || || || |||||| ||||||||||| |||| || ||| | || ||
Sbjct 700950 ACCAGATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCA 700891
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| || |||| ||||||||| || | ||| | || ||||| |||
Sbjct 700890 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 700831
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| || | || |||||||| | || || ||||
Sbjct 700830 ATCTTCGACTTGACATTGT--CAATGGTATCCGATGACTCCACCTCAAGGGTGATAGTCT 700773
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || ||||| || ||||| |||||
Sbjct 700772 TTCCGGTAAGAGTCTTGACAAAGATCTGCAT 700742
Score = 109 bits (120), Expect = 4e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||||||| || || |||||| ||||||||||| || | || ||| | || ||
Sbjct 700723 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCCTC 700664
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| ||||| || |||| ||||||||| || | ||| | ||| ||||| |||
Sbjct 700663 AAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTG 700604
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | ||||| || | || || || || | ||||| |||||
Sbjct 700603 AATCTTGGACTTGACGTTGTCGATGGTATCCGACGACTCGACTTCGAGAGTAATGGTCTT 700544
Query 44308 TCCCGTGAGGGTCTTCACGA 44327
|| ||||||||||| ||||
Sbjct 700543 GCCGGTGAGGGTCTTGACGA 700524
Score = 104 bits (114), Expect = 2e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||| | || || ||||| || ||| |||||| ||||||||||| ||
Sbjct 700459 CATACCACCACGCAGACGCAGGACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 700400
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || || | || ||||||||||| || || || || | ||| ||||| || |
Sbjct 700399 GGAAAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATGAGACGTTGCTGGTCCGG 700340
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||| ||||| ||| ||||| ||| | | | |||||||||| |||||
Sbjct 700339 AGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 700280
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGT 44313
||||| | ||| || ||||| |||||
Sbjct 700279 GACCTCTAGCGTGATGGTCTTGCCCGT 700253
>seq16
Length=638914
Score = 105 bits (116), Expect = 5e-18
Identities = 132/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| || |||||||| |||| || ||| | || ||||||||||| || || ||||
Sbjct 520932 CCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 520873
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267
||| ||||||||| || | || | || ||||| ||| ||||| ||| | |
Sbjct 520872 TCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 520813
Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| || ||||| | ||| || ||||||| ||||| ||||| ||||| |||||||| ||||
Sbjct 520812 CGATCGTGTCCGAGGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 520753
Query 44328 A 44328
|
Sbjct 520752 A 520752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990268378510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |