Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03- 01] 30 sequences; 29,634,442 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq16 118 3e-21 >seq6 Length=1902109 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || |||||||| |||||||| || || Sbjct 700745 CAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCGGAT 700804 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||| || || || |||||||||||||| Sbjct 700805 ACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 700864 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || ||||| | |||||| |||| || ||| || Sbjct 700865 CGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAACATC 700924 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||||||| ||| Sbjct 700925 CAGAAGGAGTCTACTCTGCATCTGGTT 700951 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| ||| || ||| Sbjct 700973 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCGGAC 701032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| || || || |||||||||||||| Sbjct 701033 ACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 701092 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || ||| ||||||| ||| || Sbjct 701093 CGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAACATC 701152 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || || |||||||| ||| || Sbjct 701153 CAGAAGGAGTCGACTCTGCATCTGGTTCTG 701182 Score = 136 bits (150), Expect = 1e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| ||| || ||||||||||| |||||||| Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACGTCAAGTCC 700312 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || ||||||||||||||||| || || ||||| || || Sbjct 700313 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAAG 700372 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | |||||| |||| || ||| |||| || || || || || || Sbjct 700373 CAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 700432 Query 178125 CTTGT 178129 || || Sbjct 700433 CTAGT 700437 Score = 134 bits (148), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||| |||||||||| Sbjct 107420 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGG 107476 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||| ||||| || ||||| || || |||||||| || || || | Sbjct 107477 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTC 107536 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||| ||||| || || |||||||| || || ||||| || ||||| | ||||| Sbjct 107537 CCCCGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGT 107596 Query 178090 CCGATTATAACGTCCAAAAAG-AATCAACACTGCATC 178125 |||| || ||| |||| || | | |||| ||||||| Sbjct 107597 CCGACTACAACATCCAGAAGGTCAGCAACCCTGCATC 107633 Score = 134 bits (148), Expect = 3e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || || || ||||| || || || || ||||||| Sbjct 700524 TCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACCATCG 700583 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||||||||||| || || || |||||||||||||| || || | Sbjct 700584 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTGA 700643 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 | |||||||| || ||||| || ||||| | |||||| | || || ||| |||| || | Sbjct 700644 TTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCAGAAGG 700703 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || || || || Sbjct 700704 AGTCTACCCTCCACCTGGT 700722 >seq16 Length=638914 Score = 118 bits (130), Expect = 3e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 || ||| || | |||||| || || || || || || || || ||||| ||||| || Sbjct 520738 AACTGCCGCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGT 520797 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 ||| ||||| ||||| |||||||| ||||| |||||||| || || || || |||| Sbjct 520798 CCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGG 520857 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||||| || || |||||||| || || ||||| || ||||| | || || |||| | Sbjct 520858 ACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACT 520917 Query 178096 ATAACGTCCAAAA 178108 | ||| | || || Sbjct 520918 ACAACATTCAGAA 520930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730737315820