Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thielaviopsis_20paradoxa_20[genbank_20GCA_5F001599615.1_202016-03-
01] 30 sequences; 29,634,442 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 1e-31
seq16 118 3e-21
>seq6
Length=1902109
Score = 152 bits (168), Expect = 1e-31
Identities = 158/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || ||||| || |||||||| |||||||| || ||
Sbjct 700745 CAGATCTTTGTCAAGACTCTTACCGGAAAGACTATCACCCTTGAGGTGGAGTCATCGGAT 700804
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| |||||||| || || || ||||||||||||||
Sbjct 700805 ACCATTGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 700864
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || |||||||| || ||||| || ||||| | |||||| |||| || ||| ||
Sbjct 700865 CGTCTGATTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCCGACTACAACATC 700924
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || |||||||| |||
Sbjct 700925 CAGAAGGAGTCTACTCTGCATCTGGTT 700951
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || ||||| || || || || || || ||||| || ||||| ||| || |||
Sbjct 700973 CAGATCTTTGTGAAGACGCTGACTGGCAAGACCATCACGCTAGAGGTCGAATCGTCGGAC 701032
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| |||||||||||||| || || || ||||||||||||||
Sbjct 701033 ACGATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAG 701092
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| || ||||| | || ||| ||||||| ||| ||
Sbjct 701093 CGTCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCCGATTACAACATC 701152
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|| || || || || |||||||| ||| ||
Sbjct 701153 CAGAAGGAGTCGACTCTGCATCTGGTTCTG 701182
Score = 136 bits (150), Expect = 1e-26
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| || ||||| ||| || ||||||||||| ||||||||
Sbjct 700253 ACGGGCAAGACCATCACGCTAGAGGTCGAATCTTCCGACACCATCGACAACGTCAAGTCC 700312
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || ||||||||||||||||| || || ||||| || ||
Sbjct 700313 AAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAACGTCTCATTTTCGCTGGTAAG 700372
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | |||||| |||| || ||| |||| || || || || || ||
Sbjct 700373 CAGCTGGAGGATGGTCGTACTCTTTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 700432
Query 178125 CTTGT 178129
|| ||
Sbjct 700433 CTAGT 700437
Score = 134 bits (148), Expect = 3e-26
Identities = 161/217 (74%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| || |||| | |||||||| || || || || || || ||||| ||||||||||
Sbjct 107420 AGGTCAAGATGC---AGATTTTCGTCAAGACCCTGACGGGTAAGACGATTACCCTCGAGG 107476
Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
| || ||| ||||| ||||| || ||||| || || |||||||| || || || |
Sbjct 107477 TTGAGTCCTCGGACACTATCGACAATGTCAAGTCCAAAATCCAGGACAAGGAGGGCATTC 107536
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
| ||||| ||||| || || |||||||| || || ||||| || ||||| | |||||
Sbjct 107537 CCCCGGATCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGT 107596
Query 178090 CCGATTATAACGTCCAAAAAG-AATCAACACTGCATC 178125
|||| || ||| |||| || | | |||| |||||||
Sbjct 107597 CCGACTACAACATCCAGAAGGTCAGCAACCCTGCATC 107633
Score = 134 bits (148), Expect = 3e-26
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || ||||| || || || || || ||||| || || || || |||||||
Sbjct 700524 TCGTCAAGACCCTCACCGGCAAGACCATTACTCTCGAAGTCGAGTCGTCGGATACCATCG 700583
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| |||||||||||||| || || || |||||||||||||| || || |
Sbjct 700584 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTGA 700643
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
| |||||||| || ||||| || ||||| | |||||| | || || ||| |||| || |
Sbjct 700644 TTTTCGCCGGCAAGCAGCTTGAGGATGGTCGCACTCTTTCTGACTACAACATCCAGAAGG 700703
Query 178111 AATCAACACTGCATCTTGT 178129
| || || || || || ||
Sbjct 700704 AGTCTACCCTCCACCTGGT 700722
>seq16
Length=638914
Score = 118 bits (130), Expect = 3e-21
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975
|| ||| || | |||||| || || || || || || || || ||||| ||||| ||
Sbjct 520738 AACTGCCGCACAGTTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGT 520797
Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035
||| ||||| ||||| |||||||| ||||| |||||||| || || || || ||||
Sbjct 520798 CCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGG 520857
Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095
||||||| || || |||||||| || || ||||| || ||||| | || || |||| |
Sbjct 520858 ACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACT 520917
Query 178096 ATAACGTCCAAAA 178108
| ||| | || ||
Sbjct 520918 ACAACATTCAGAA 520930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730737315820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |