Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1092 136 8e-27 seq677 84.2 5e-11 >seq1092 Length=189081 Score = 136 bits (150), Expect = 8e-27 Identities = 316/470 (67%), Gaps = 10/470 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||||| | ||||| || |||| | || ||||| || | || || ||| | | Sbjct 137397 TTTGCCCAACGTCTGGTGGCCTTTGCCGCCGTCGAAGGCATCTTCTTCTC-GGGCGCCTT 137339 Query 230233 TGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 230291 ||| |||||||||||||||| || ||| | ||||| ||||| | || ||||| Sbjct 137338 TGCTTCCATCTTTTGGCTGCGCAAGCGCGGTCTCATGCCCGGCCTGACCTTTTCCAACGA 137279 Query 230292 GTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCT 230351 | | || ||||||||||| || || | | || | | || | | || | || Sbjct 137278 GCTGATTTCCCGCGACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTCTTCTCGCACCT 137219 Query 230352 CCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| | || | ||| | | | | ||||||| || || || || | | Sbjct 137218 C---AACAACCGCCCCAGCAAGAAGCTGATTGAGGAAATCATCACCGACGCTGTCGCCAT 137162 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAAC 230467 |||||||||||| | ||||| | || || ||| || | ||||||||||| || | Sbjct 137161 TGAAAAGGAGTTCTTGACCGACGCCCTGCCCTG-CGCTCTGCTCGGCATGAACGCCGACC 137103 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 | ||| |||||||| || || || |||||||| | | || || || || |||| | Sbjct 137102 TGATGAAGCAGTACATTGAGTTTGTTGCCGACCGTCTGCTGGTCGCCCTCGGCAACGAAA 137043 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | || ||| ||| | |||||||||| || |||||| ||| ||||| || |||| Sbjct 137042 AGGTCTACCGCTCCACCAACCCCTTTGACTTCATGGAGAACATCTCGCTCGGCGGCAAGA 136983 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||||||||| ||||||||| | ||||| || | | | |||||| || Sbjct 136982 CCAACTTCTTCGAGAAGCGTGTCGGCGACTACCAAAAGGCCGGTGTGCTG 136933 >seq677 Length=56570 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || |||| ||| |||| || ||||||||||| || || || |||| || Sbjct 3107 GGGGAAACCCTCAACCTGCTCGTTGTTGATGGCGCGCATCAGCGTCGACTTGCCCGAACC 3048 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || |||||||||||||| | || || ||||| | | || | ||| || Sbjct 3047 GTTGGGACCGCACAGACCGTAGCGCTGGCCACGCTTCAGACGCAGATGGGTCTGGTTAAG 2988 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || |||| || || ||||| || || | ||||| |||||||| Sbjct 2987 CAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCACAGGTCCTCACC 2934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057792623948450