Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thielaviopsis_20punctulata_20[genbank_20GCA_5F000968615.1_202015-04- 03] 2,315 sequences; 28,117,660 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1092 131 2e-25 >seq1092 Length=189081 Score = 131 bits (144), Expect = 2e-25 Identities = 554/860 (64%), Gaps = 29/860 (3%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| |||| || || || ||||| ||||| || ||||| | || || || |||| Sbjct 136947 TTTGGTAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGCGAGATGTTCT 137006 Query 16734 CCATGAAATCAAAAGGATTAGT--AGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| ||||| || || || ||| | | | |||| | | || || || | | Sbjct 137007 CCATGAAGTCAAAGGGGTTGGTGGAGCGGTAGACCTTTTCG--TTGCCGAGGGCGACCAG 137064 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 | | || || ||||| || || || || ||| | ||| |||||| || | || Sbjct 137065 CAGACGGTCGGCAACAAACTCAATGTACTGCTTCATCAGGTCGGCGTTCATGCCGAGCAG 137124 Query 16852 A-CGTACCGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 | || | || || || || ||||| || || || || || | || || || | || Sbjct 137125 AGCGCAG-GGCAGGGCGTCGGTCAAGAACTCCTTT-TCAATGGCGACAGCGTCGGTGATG 137182 Query 16910 ATA----CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACA 16965 || | | || || || || || |||| |||| | | || || | ||| || Sbjct 137183 ATTTCCTCAATCAGCTTCTTGCTGGGGCGGT---TGTTGAGG-TGCGAGAAGAGCAGGCA 137238 Query 16966 TGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCC 17025 || || || || | |||||||| | | || || ||||| ||||| |||| || Sbjct 137239 GGCAAAGTCTGTGTGCAGGCCCTCGTCGCGGGAAATCAGCTCGTTGGAAAAGGTCAGGCC 137298 Query 17026 GGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATAT 17085 |||||| || || || | |||||| || | || || | || || ||||| || Sbjct 137299 GGGCATGAGACCGCGCTTGCGCAGCCAAAAGATGGAAGCAAAGGCGCCCGAGAAGAAGAT 137358 Query 17086 ACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAAT 17145 || ||||||| ||||| || | | |||| ||| | |||| || | || ||| Sbjct 137359 GCCTTCGACGGCGGCAAAGGCCACCAGACGTTGGGCAAAGGTCGACTCGTGGTCGGCAAT 137418 Query 17146 CCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 ||| || | |||| ||||| || | ||||| || || || ||||| ||||| Sbjct 137419 CCACTTGAGGGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTATCAATGGCGTTAAA 137478 Query 17206 TAATTT-CT-CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 | | || | | | | | || | || ||||| || || || || ||| | Sbjct 137479 CAGGTAGCTGCGCTGGGCGG--GCTCCTTGATGTACGTGTCAATCAGCAGCGAGTATGTC 137536 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 |||||||| ||||||||||| |||||||| ||||| ||||| ||||| || | || Sbjct 137537 TCGGAGTGGATGTTCTCCATCATGATCTGAAAGCCGTAGAAGCAGCGGGCCTCGGGGATC 137596 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || || | |||| || || | || || ||||| || |||||||| |||||| Sbjct 137597 TGGACCTCGCCCGAGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGACGCGGCA 137656 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG------C 17437 || || |||| | ||| ||||| || ||||||||| ||| | ||| | Sbjct 137657 AAGAAGGCCAGCACGTGCGAGATGAAGTACTTTTCGTCC-TTGT--TCATGCGGTTGTTC 137713 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 ||||| | | || ||||| | || | || |||| ||||| || ||| | ||| Sbjct 137714 CAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGACGCCTCGGCC 137773 Query 17498 TTTTTATACATATTCCAAAT 17517 ||||| ||||| | ||| || Sbjct 137774 TTTTTGTACATTTGCCAGAT 137793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530623524200